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This page was generated on 2023-06-06 11:00:39 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
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INSTALL results for RBGL on kunpeng2


To the developers/maintainers of the RBGL package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RBGL.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1609/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RBGL 1.77.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/RBGL
git_branch: devel
git_last_commit: 9d7bde9
git_last_commit_date: 2023-05-15 15:22:58 -0000 (Mon, 15 May 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: RBGL
Version: 1.77.1
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL RBGL
StartedAt: 2023-06-05 08:12:20 -0000 (Mon, 05 Jun 2023)
EndedAt: 2023-06-05 08:15:08 -0000 (Mon, 05 Jun 2023)
EllapsedTime: 167.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL RBGL
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘RBGL’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c bbc.cpp -o bbc.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c cliques.cpp -o cliques.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c clusteringCoef.cpp -o clusteringCoef.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c dominatorTree.cpp -o dominatorTree.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c hcs.cpp -o hcs.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c incrConnComp.cpp -o incrConnComp.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c interfaces.cpp -o interfaces.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c minST.cpp -o minST.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c mincut.cpp -o mincut.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c ordering.cpp -o ordering.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/king_ordering.hpp:18,
                 from ordering.cpp:9:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c planar.cpp -o planar.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c registerSigHandlers.cpp -o registerSigHandlers.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c shortestPath.cpp -o shortestPath.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c sna.cpp -o sna.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c transitive_closure.cpp -o transitive_closure.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:21,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c wavefront.cpp -o wavefront.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o registerSigHandlers.o shortestPath.o sna.o transitive_closure.o wavefront.o -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-RBGL/00new/RBGL/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RBGL)