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This page was generated on 2023-06-06 11:00:39 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
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CHECK results for RBGL on kunpeng2


To the developers/maintainers of the RBGL package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RBGL.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1609/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RBGL 1.77.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/RBGL
git_branch: devel
git_last_commit: 9d7bde9
git_last_commit_date: 2023-05-15 15:22:58 -0000 (Mon, 15 May 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: RBGL
Version: 1.77.1
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:RBGL.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings RBGL_1.77.1.tar.gz
StartedAt: 2023-06-06 04:55:51 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 04:56:35 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 43.1 seconds
RetCode: 0
Status:   OK  
CheckDir: RBGL.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:RBGL.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings RBGL_1.77.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/RBGL.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘RBGL/DESCRIPTION’ ... OK
* this is package ‘RBGL’ version ‘1.77.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RBGL’ can be installed ... OK
* used C++ compiler: ‘g++ (GCC) 10.3.1’
* checking installed package size ... NOTE
  installed size is 35.1Mb
  sub-directories of 1Mb or more:
    libs       32.5Mb
    old_boost   1.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘methods’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) tsort.Rd:20: Escaped LaTeX specials: \_
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/home/biocbuild/R/R-4.3.0/site-library/RBGL/libs/RBGL.so’:
  Found ‘abort’, possibly from ‘abort’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘RBGL.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/RBGL.Rcheck/00check.log’
for details.

Installation output

RBGL.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL RBGL
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘RBGL’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c bbc.cpp -o bbc.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c cliques.cpp -o cliques.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c clusteringCoef.cpp -o clusteringCoef.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c dominatorTree.cpp -o dominatorTree.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c hcs.cpp -o hcs.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c incrConnComp.cpp -o incrConnComp.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c interfaces.cpp -o interfaces.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c minST.cpp -o minST.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c mincut.cpp -o mincut.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c ordering.cpp -o ordering.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/king_ordering.hpp:18,
                 from ordering.cpp:9:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c planar.cpp -o planar.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c registerSigHandlers.cpp -o registerSigHandlers.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c shortestPath.cpp -o shortestPath.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c sna.cpp -o sna.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c transitive_closure.cpp -o transitive_closure.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:21,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c wavefront.cpp -o wavefront.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o registerSigHandlers.o shortestPath.o sna.o transitive_closure.o wavefront.o -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-RBGL/00new/RBGL/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RBGL)

Tests output

RBGL.Rcheck/tests/runTests.Rout


R version 4.3.0 (2023-04-21) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("RBGL")

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min



RUNIT TEST PROTOCOL -- Tue Jun  6 04:56:22 2023 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
RBGL RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  0.748   0.047   0.785

Example timings

RBGL.Rcheck/RBGL-Ex.timings

nameusersystemelapsed
FileDep0.4300.0240.457
astarSearch0.0560.0000.056
bandwidth0.0120.0000.012
bellman.ford.sp0.0390.0000.040
bfs0.0120.0010.014
biConnComp0.0060.0000.006
boyerMyrvoldPlanarityTest0.0070.0000.007
chrobakPayneStraightLineDrawing0.0390.0040.042
clusteringCoef0.0070.0000.007
clusteringCoefAppr0.0050.0020.006
coloring0.0030.0010.005
connectedComp0.0120.0000.014
dag.sp0.0060.0010.007
dijkstra.sp0.0150.0020.017
dominatorTree0.0050.0000.005
edgeConn0.0050.0000.005
edmondsMaxCardinalityMatching0.0150.0000.015
edmondsOptimumBranching0.0060.0000.006
extractPath0.0020.0000.002
floyd.warshall.all.pairs.sp0.0060.0000.006
gprofile0.0050.0000.004
graphGenerator000
highlyConnSG0.0070.0000.008
incrConnComp0.0060.0000.006
is.triangulated0.0070.0040.011
isKuratowskiSubgraph0.0070.0000.007
isStraightLineDrawing0.0070.0000.007
isomorphism0.0090.0000.009
johnson.all.pairs.sp0.0050.0000.006
kCliques0.0050.0000.006
kCores0.0350.0000.037
lambdaSets0.0080.0000.009
layout000
makeBiconnectedPlanar0.0080.0000.008
makeConnected0.0060.0000.006
makeMaximalPlanar0.0070.0000.007
maxClique0.0070.0040.011
maxFlow0.010.000.01
minCut0.0050.0000.005
mstree.kruskal0.0160.0000.017
mstree.prim0.0060.0000.006
ordering0.0080.0000.009
planarCanonicalOrdering0.0020.0030.006
planarFaceTraversal0.0060.0010.006
removeSelfLoops0.0080.0000.008
separates0.0090.0000.009
sp.between0.0180.0020.020
strongComp0.0080.0020.010
transClosure0.0070.0000.007
transitivity0.0060.0000.005
tsort0.0040.0000.003
wavefront0.0110.0000.010