Back to Build/check report for BioC 3.18:   simplified   long
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2023-05-26 06:18:15 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for rmelting on kunpeng2


To the developers/maintainers of the rmelting package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rmelting.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1706/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rmelting 1.17.0  (landing page)
J. Aravind
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/rmelting
git_branch: devel
git_last_commit: 66bbbc3
git_last_commit_date: 2023-04-25 15:07:44 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: rmelting
Version: 1.17.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rmelting
StartedAt: 2023-05-26 01:05:35 -0000 (Fri, 26 May 2023)
EndedAt: 2023-05-26 01:06:01 -0000 (Fri, 26 May 2023)
EllapsedTime: 26.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rmelting
###
##############################################################################
##############################################################################


* checking for file ‘rmelting/DESCRIPTION’ ... OK
* preparing ‘rmelting’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: rmelting
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘Tutorial.Rmd’ using rmarkdown_notangle
WARNING : 
 The formula of Marmur, Doty, Chester and Marshak is originally established at a given ionic strength : Na = 0 M, Mg = 0.0015 M, Tris = 0.01 M and k = 0.05 M
WARNING : 
 The formula of Marmur, Doty, Chester and Marshak is originally established at a given ionic strength : Na = 0 M, Mg = 0.0015 M, Tris = 0.01 M and k = 0.05 M
WARNING : 
 The internal loop model san04 has not been tested with experimental values.
WARNING : 
 The internal loop model san04 has not been tested with experimental values.
WARNING : 
 The parameters for AT closing base pair are missing. The results can lose accuracy.
WARNING : 
 The long bulge loop model san04 has not been tested with experimental values.
WARNING : 
 The long bulge loop model tur06 has not been tested with experimental values.
WARNING : 
 The long bulge loop model tur06 has not been tested with experimental values.
WARNING : 
 The long bulge loop model san04 has not been tested with experimental values.
WARNING : 
 The long bulge loop model san04 has not been tested with experimental values.
WARNING : 
 The long bulge loop model tur06 has not been tested with experimental values.
WARNING : 
 The long bulge loop model tur06 has not been tested with experimental values.
WARNING : 
 The sodium correction of Santalucia et al. (1996) is not reliable for sodium concentrations inferior to 0.1M.
WARNING : 
 The sodium correction of Schildkraut Lifson (1965) is applicable for sodium concentrations between 0.01 and 0.2 M.
WARNING : 
 The sodium correction of Zhi-Jie Tan et al. (2007) is originally established for RNA duplexes.
WARNING : 
 The magnesium correction of Zhi-Jie Tan et al. (2007) is originally established for RNA duplexes.
WARNING : 
 The magnesium correction of Zhi-Jie Tan et al. (2007)is originally established for RNA or DNA duplexes.
WARNING : 
 The magnesium correction of Zhi-Jie Tan et al. (2007)is originally established for RNA or DNA duplexes.
WARNING : 
 The magnesium correction of Zhi-Jie Tan et al. (2007)is originally established for RNA or DNA duplexes.
WARNING : 
 The current DMSO corrections has not been tested with experimenta values.
WARNING : 
 The current DMSO corrections has not been tested with experimenta values.
WARNING : 
 The current DMSO corrections has not been tested with experimenta values.
WARNING : 
 The current DMSO corrections has not been tested with experimenta values.
WARNING : 
 The current DMSO corrections has not been tested with experimenta values.
WARNING : 
 The current formamide correction has not been tested with experimental values.
WARNING : 
 The current formamide correction has not been tested with experimental values.
WARNING : 
 The current formamide correction has not been tested with experimental values.
! LaTeX Error: File `wrapfig.sty' not found.

! Emergency stop.
<read *> 

Error: processing vignette 'Tutorial.Rmd' failed with diagnostics:
LaTeX failed to compile /tmp/Rtmpp679Gr/Rbuild128d8256a1efa2/rmelting/vignettes/Tutorial.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Tutorial.log for more info.
--- failed re-building ‘Tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘Tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted