Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-05-26 06:18:15 -0000 (Fri, 26 May 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
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To the developers/maintainers of the rmelting package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rmelting.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1706/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rmelting 1.17.0 (landing page) J. Aravind
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | |||||||||
Package: rmelting |
Version: 1.17.0 |
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rmelting |
StartedAt: 2023-05-26 01:05:35 -0000 (Fri, 26 May 2023) |
EndedAt: 2023-05-26 01:06:01 -0000 (Fri, 26 May 2023) |
EllapsedTime: 26.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rmelting ### ############################################################################## ############################################################################## * checking for file ‘rmelting/DESCRIPTION’ ... OK * preparing ‘rmelting’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages Loading required namespace: rmelting * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘Tutorial.Rmd’ using rmarkdown_notangle WARNING : The formula of Marmur, Doty, Chester and Marshak is originally established at a given ionic strength : Na = 0 M, Mg = 0.0015 M, Tris = 0.01 M and k = 0.05 M WARNING : The formula of Marmur, Doty, Chester and Marshak is originally established at a given ionic strength : Na = 0 M, Mg = 0.0015 M, Tris = 0.01 M and k = 0.05 M WARNING : The internal loop model san04 has not been tested with experimental values. WARNING : The internal loop model san04 has not been tested with experimental values. WARNING : The parameters for AT closing base pair are missing. The results can lose accuracy. WARNING : The long bulge loop model san04 has not been tested with experimental values. WARNING : The long bulge loop model tur06 has not been tested with experimental values. WARNING : The long bulge loop model tur06 has not been tested with experimental values. WARNING : The long bulge loop model san04 has not been tested with experimental values. WARNING : The long bulge loop model san04 has not been tested with experimental values. WARNING : The long bulge loop model tur06 has not been tested with experimental values. WARNING : The long bulge loop model tur06 has not been tested with experimental values. WARNING : The sodium correction of Santalucia et al. (1996) is not reliable for sodium concentrations inferior to 0.1M. WARNING : The sodium correction of Schildkraut Lifson (1965) is applicable for sodium concentrations between 0.01 and 0.2 M. WARNING : The sodium correction of Zhi-Jie Tan et al. (2007) is originally established for RNA duplexes. WARNING : The magnesium correction of Zhi-Jie Tan et al. (2007) is originally established for RNA duplexes. WARNING : The magnesium correction of Zhi-Jie Tan et al. (2007)is originally established for RNA or DNA duplexes. WARNING : The magnesium correction of Zhi-Jie Tan et al. (2007)is originally established for RNA or DNA duplexes. WARNING : The magnesium correction of Zhi-Jie Tan et al. (2007)is originally established for RNA or DNA duplexes. WARNING : The current DMSO corrections has not been tested with experimenta values. WARNING : The current DMSO corrections has not been tested with experimenta values. WARNING : The current DMSO corrections has not been tested with experimenta values. WARNING : The current DMSO corrections has not been tested with experimenta values. WARNING : The current DMSO corrections has not been tested with experimenta values. WARNING : The current formamide correction has not been tested with experimental values. WARNING : The current formamide correction has not been tested with experimental values. WARNING : The current formamide correction has not been tested with experimental values. ! LaTeX Error: File `wrapfig.sty' not found. ! Emergency stop. <read *> Error: processing vignette 'Tutorial.Rmd' failed with diagnostics: LaTeX failed to compile /tmp/Rtmpp679Gr/Rbuild128d8256a1efa2/rmelting/vignettes/Tutorial.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Tutorial.log for more info. --- failed re-building ‘Tutorial.Rmd’ SUMMARY: processing the following file failed: ‘Tutorial.Rmd’ Error: Vignette re-building failed. Execution halted