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This page was generated on 2023-05-26 06:18:14 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for rGREAT on kunpeng2


To the developers/maintainers of the rGREAT package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rGREAT.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1677/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rGREAT 2.3.0  (landing page)
Zuguang Gu
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/rGREAT
git_branch: devel
git_last_commit: 032dd71
git_last_commit_date: 2023-04-25 14:37:39 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: rGREAT
Version: 2.3.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rGREAT
StartedAt: 2023-05-26 00:58:56 -0000 (Fri, 26 May 2023)
EndedAt: 2023-05-26 01:19:26 -0000 (Fri, 26 May 2023)
EllapsedTime: 1229.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rGREAT
###
##############################################################################
##############################################################################


* checking for file ‘rGREAT/DESCRIPTION’ ... OK
* preparing ‘rGREAT’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘local-GREAT.Rmd’ using rmarkdown
--- finished re-building ‘local-GREAT.Rmd’

--- re-building ‘online-GREAT.Rmd’ using rmarkdown
--- finished re-building ‘online-GREAT.Rmd’

--- re-building ‘other-docs.Rmd’ using rmarkdown
--- finished re-building ‘other-docs.Rmd’

--- re-building ‘other-geneset-databases.Rmd’ using rmarkdown
--- finished re-building ‘other-geneset-databases.Rmd’

--- re-building ‘other-organisms.Rmd’ using rmarkdown
trying URL 'https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCF_011762595.1/download?include_annotation_type=GENOME_GFF,SEQUENCE_REPORT&filename=GCF_011762595.1.zip'
downloaded 16.3 MB


Quitting from lines 118-120 [unnamed-chunk-10] (other-organisms.Rmd)
Error: processing vignette 'other-organisms.Rmd' failed with diagnostics:
download from 'https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCF_011762595.1/download?include_annotation_type=GENOME_GFF,SEQUENCE_REPORT&filename=GCF_011762595.1.zip' failed
--- failed re-building ‘other-organisms.Rmd’

SUMMARY: processing the following file failed:
  ‘other-organisms.Rmd’

Error: Vignette re-building failed.
Execution halted