Back to Build/check report for BioC 3.18:   simplified   long
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2023-05-26 06:18:14 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for rBiopaxParser on kunpeng2


To the developers/maintainers of the rBiopaxParser package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rBiopaxParser.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1610/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rBiopaxParser 2.41.0  (landing page)
Frank Kramer
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/rBiopaxParser
git_branch: devel
git_last_commit: 802e6d2
git_last_commit_date: 2023-04-25 14:25:39 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: rBiopaxParser
Version: 2.41.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rBiopaxParser
StartedAt: 2023-05-26 00:50:31 -0000 (Fri, 26 May 2023)
EndedAt: 2023-05-26 00:50:37 -0000 (Fri, 26 May 2023)
EllapsedTime: 6.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rBiopaxParser
###
##############################################################################
##############################################################################


* checking for file ‘rBiopaxParser/DESCRIPTION’ ... OK
* preparing ‘rBiopaxParser’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘rBiopaxParserVignette.Rnw’ using Sweave
Loading required package: data.table
Added protein with ID: proteinid_A
Added physicalEntityParticipant with ID: PEPid_A
Added BiochemicalReaction with ID: BCRid_A
Added protein with ID: proteinid_B
Added physicalEntityParticipant with ID: PEPid_B
Added BiochemicalReaction with ID: BCRid_B
Added protein with ID: proteinid_C
Added physicalEntityParticipant with ID: PEPid_C
Added BiochemicalReaction with ID: BCRid_C
Added protein with ID: proteinid_D
Added physicalEntityParticipant with ID: PEPid_D
Added BiochemicalReaction with ID: BCRid_D
Added protein with ID: proteinid_E
Added physicalEntityParticipant with ID: PEPid_E
Added BiochemicalReaction with ID: BCRid_E
Added Control with ID: control_1
Added Control with ID: control_2
Added Control with ID: control_3
Added Control with ID: control_4
Added Pathway with ID: pwid1
Added Pathway with ID: pwid2
Added Pathway with ID: pwid3
Error: processing vignette 'rBiopaxParserVignette.Rnw' failed with diagnostics:
unable to run pdflatex on 'rBiopaxParserVignette.tex'
LaTeX errors:
! LaTeX Error: File `tocloft.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.10 \usepackage
                {hyperref}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘rBiopaxParserVignette.Rnw’

SUMMARY: processing the following file failed:
  ‘rBiopaxParserVignette.Rnw’

Error: Vignette re-building failed.
Execution halted