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This page was generated on 2023-05-26 06:18:13 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for phyloseq on kunpeng2


To the developers/maintainers of the phyloseq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/phyloseq.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1493/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phyloseq 1.45.0  (landing page)
Paul J. McMurdie
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/phyloseq
git_branch: devel
git_last_commit: 78b659b
git_last_commit_date: 2023-04-25 14:22:14 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: phyloseq
Version: 1.45.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq
StartedAt: 2023-05-26 00:34:15 -0000 (Fri, 26 May 2023)
EndedAt: 2023-05-26 00:36:33 -0000 (Fri, 26 May 2023)
EllapsedTime: 138.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq
###
##############################################################################
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* checking for file ‘phyloseq/DESCRIPTION’ ... OK
* preparing ‘phyloseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘phyloseq-FAQ.Rmd’ using rmarkdown
--- finished re-building ‘phyloseq-FAQ.Rmd’

--- re-building ‘phyloseq-analysis.Rmd’ using rmarkdown
--- finished re-building ‘phyloseq-analysis.Rmd’

--- re-building ‘phyloseq-basics.Rmd’ using rmarkdown
YAML parse exception at line 2, column 6,
while scanning a block scalar:
did not find expected comment or line break
Error: processing vignette 'phyloseq-basics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 64
--- failed re-building ‘phyloseq-basics.Rmd’

--- re-building ‘phyloseq-mixture-models.Rmd’ using rmarkdown
--- finished re-building ‘phyloseq-mixture-models.Rmd’

SUMMARY: processing the following file failed:
  ‘phyloseq-basics.Rmd’

Error: Vignette re-building failed.
Execution halted