| Back to Build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-05-26 06:18:11 -0000 (Fri, 26 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the mbkmeans package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1122/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mbkmeans 1.17.0 (landing page) Davide Risso
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | |||||||||
| Package: mbkmeans |
| Version: 1.17.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL mbkmeans |
| StartedAt: 2023-05-25 19:15:33 -0000 (Thu, 25 May 2023) |
| EndedAt: 2023-05-25 19:16:54 -0000 (Thu, 25 May 2023) |
| EllapsedTime: 80.8 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL mbkmeans
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘mbkmeans’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhdf5lib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/beachmat/include' -I'/home/biocbuild/R/R-4.3.0/site-library/ClusterR/include' -I/usr/local/include -fPIC -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhdf5lib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/beachmat/include' -I'/home/biocbuild/R/R-4.3.0/site-library/ClusterR/include' -I/usr/local/include -fPIC -g -O2 -c mini_batch.cpp -o mini_batch.o
In file included from /home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include/armadillo:26,
from /home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include/RcppArmadillo.h:29,
from mini_batch.cpp:2:
/home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: ‘#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed’
338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
/home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: ‘#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead’
343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
/home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: ‘#pragma message: INFO: see the documentation for details’
346 | #pragma message ("INFO: see the documentation for details")
| ^
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o mbkmeans.so RcppExports.o mini_batch.o -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-mbkmeans/00new/mbkmeans/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mbkmeans)