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This page was generated on 2023-05-26 06:18:11 -0000 (Fri, 26 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the maftools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maftools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1087/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maftools 2.17.0 (landing page) Anand Mayakonda
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | |||||||||
| Package: maftools |
| Version: 2.17.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL maftools |
| StartedAt: 2023-05-25 19:39:15 -0000 (Thu, 25 May 2023) |
| EndedAt: 2023-05-25 19:39:37 -0000 (Thu, 25 May 2023) |
| EllapsedTime: 22.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL maftools
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* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘maftools’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -c ntcounts.c -o ntcounts.o
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -c snpcounts.c -o snpcounts.o
snpcounts.c: In function ‘snpcounts’:
snpcounts.c:56:26: warning: passing argument 1 of ‘countlines’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
56 | int nloci = countlines(bedfile);
| ^~~~~~~
snpcounts.c:13:22: note: expected ‘char *’ but argument is of type ‘const char *’
13 | int countlines(char *filename){
| ~~~~~~^~~~~~~~
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -c somaticfreq.c -o somaticfreq.o
gcc -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o maftools.so ntcounts.o snpcounts.o somaticfreq.o /home/biocbuild/R/R-4.3.0/site-library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-maftools/00new/maftools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maftools)