Back to Build/check report for BioC 3.18:   simplified   long
ABCDEFGH[I]JKLMNOPQRSTUVWXYZ

This page was generated on 2023-05-26 06:18:10 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for iCNV on kunpeng2


To the developers/maintainers of the iCNV package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iCNV.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 958/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iCNV 1.21.0  (landing page)
Zilu Zhou
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/iCNV
git_branch: devel
git_last_commit: b94e520
git_last_commit_date: 2023-04-25 15:00:07 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: iCNV
Version: 1.21.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data iCNV
StartedAt: 2023-05-25 23:08:44 -0000 (Thu, 25 May 2023)
EndedAt: 2023-05-25 23:09:45 -0000 (Thu, 25 May 2023)
EllapsedTime: 61.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data iCNV
###
##############################################################################
##############################################################################


* checking for file ‘iCNV/DESCRIPTION’ ... OK
* preparing ‘iCNV’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘iCNV-vignette.Rmd’ using rmarkdown

Quitting from lines 89-129 [CODEX_Normalization_1] (iCNV-vignette.Rmd)
Error: processing vignette 'iCNV-vignette.Rmd' failed with diagnostics:
there is no package called 'WES.1KG.WUGSC'
--- failed re-building ‘iCNV-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘iCNV-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted