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This page was generated on 2023-05-26 06:18:09 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for glmSparseNet on kunpeng2


To the developers/maintainers of the glmSparseNet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/glmSparseNet.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 835/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
glmSparseNet 1.19.0  (landing page)
André Veríssimo
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/glmSparseNet
git_branch: devel
git_last_commit: e921121
git_last_commit_date: 2023-04-25 15:04:37 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: glmSparseNet
Version: 1.19.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data glmSparseNet
StartedAt: 2023-05-25 22:45:19 -0000 (Thu, 25 May 2023)
EndedAt: 2023-05-25 22:51:38 -0000 (Thu, 25 May 2023)
EllapsedTime: 379.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data glmSparseNet
###
##############################################################################
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* checking for file ‘glmSparseNet/DESCRIPTION’ ... OK
* preparing ‘glmSparseNet’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘example_brca_logistic.Rmd’ using rmarkdown

Quitting from lines 54-57 [unnamed-chunk-2] (example_brca_logistic.Rmd)
Error: processing vignette 'example_brca_logistic.Rmd' failed with diagnostics:
failed to load resource
  name: EH596
  title: BRCA_RNASeq2GeneNorm-20160128
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': error reading from connection
--- failed re-building ‘example_brca_logistic.Rmd’

--- re-building ‘example_brca_protein-protein-interactions_survival.Rmd’ using rmarkdown

Quitting from lines 135-138 [unnamed-chunk-8] (example_brca_protein-protein-interactions_survival.Rmd)
Error: processing vignette 'example_brca_protein-protein-interactions_survival.Rmd' failed with diagnostics:
failed to load resource
  name: EH596
  title: BRCA_RNASeq2GeneNorm-20160128
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': error reading from connection
--- failed re-building ‘example_brca_protein-protein-interactions_survival.Rmd’

--- re-building ‘example_brca_survival.Rmd’ using rmarkdown

Quitting from lines 54-57 [curated_data] (example_brca_survival.Rmd)
Error: processing vignette 'example_brca_survival.Rmd' failed with diagnostics:
failed to load resource
  name: EH596
  title: BRCA_RNASeq2GeneNorm-20160128
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': error reading from connection
--- failed re-building ‘example_brca_survival.Rmd’

--- re-building ‘example_prad_survival.Rmd’ using rmarkdown
--- finished re-building ‘example_prad_survival.Rmd’

--- re-building ‘example_skcm_survival.Rmd’ using rmarkdown
--- finished re-building ‘example_skcm_survival.Rmd’

--- re-building ‘separate2GroupsCox.Rmd’ using rmarkdown
--- finished re-building ‘separate2GroupsCox.Rmd’

SUMMARY: processing the following files failed:
  ‘example_brca_logistic.Rmd’
  ‘example_brca_protein-protein-interactions_survival.Rmd’
  ‘example_brca_survival.Rmd’

Error: Vignette re-building failed.
Execution halted