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This page was generated on 2023-05-26 06:18:18 -0000 (Fri, 26 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the VariantAnnotation package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VariantAnnotation.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 2147/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| VariantAnnotation 1.47.0 (landing page) Bioconductor Package Maintainer
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | |||||||||
| Package: VariantAnnotation |
| Version: 1.47.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL VariantAnnotation |
| StartedAt: 2023-05-25 19:17:59 -0000 (Thu, 25 May 2023) |
| EndedAt: 2023-05-25 19:19:40 -0000 (Thu, 25 May 2023) |
| EllapsedTime: 100.8 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL VariantAnnotation ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘VariantAnnotation’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 10.3.1’ gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c R_init_VariantAnnotation.c -o R_init_VariantAnnotation.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c XVector_stubs.c -o XVector_stubs.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c dna_hash.c -o dna_hash.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c rle.c -o rle.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c strhash.c -o strhash.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c utilities.c -o utilities.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c vcffile.c -o vcffile.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c vcftype.c -o vcftype.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.3.0/site-library/S4Vectors/include' -I'/home/biocbuild/R/R-4.3.0/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.3.0/site-library/XVector/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -c writevcf.c -o writevcf.o gcc -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o VariantAnnotation.so Biostrings_stubs.o IRanges_stubs.o R_init_VariantAnnotation.o XVector_stubs.o dna_hash.o rle.o strhash.o utilities.o vcffile.o vcftype.o writevcf.o /home/biocbuild/R/R-4.3.0/site-library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/R/R-4.3.0/lib -lR installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-VariantAnnotation/00new/VariantAnnotation/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘tabulate’ in package ‘VariantAnnotation’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (VariantAnnotation)