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This page was generated on 2023-05-26 06:18:16 -0000 (Fri, 26 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SpliceWiz package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpliceWiz.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1963/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SpliceWiz 1.3.1 (landing page) Alex Chit Hei Wong
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | |||||||||
| Package: SpliceWiz |
| Version: 1.3.1 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL SpliceWiz |
| StartedAt: 2023-05-25 19:54:16 -0000 (Thu, 25 May 2023) |
| EndedAt: 2023-05-25 19:57:16 -0000 (Thu, 25 May 2023) |
| EllapsedTime: 180.7 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL SpliceWiz ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘SpliceWiz’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ using C++11 g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c BAM2blocks.cpp -o BAM2blocks.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c FastaReader.cpp -o FastaReader.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c FragmentBlocks.cpp -o FragmentBlocks.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c GZTools.cpp -o GZTools.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c ReadBlockProcessor.cpp -o ReadBlockProcessor.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c ReadBlockProcessor_CoverageBlocks.cpp -o ReadBlockProcessor_CoverageBlocks.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c ReadBlockProcessor_FragmentsMap.cpp -o ReadBlockProcessor_FragmentsMap.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c ReadBlockProcessor_TandemJunctions.cpp -o ReadBlockProcessor_TandemJunctions.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c covTools.cpp -o covTools.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c main.cpp -o main.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c swEngine.cpp -o swEngine.o g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/ompBAM/include' -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/site-library/zlibbioc/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RcppProgress/include' -I/usr/local/include -fopenmp -DSPLICEWIZ -fPIC -g -O2 -c synthReadGenerator.cpp -o synthReadGenerator.o g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o SpliceWiz.so BAM2blocks.o FastaReader.o FragmentBlocks.o GZTools.o RcppExports.o ReadBlockProcessor.o ReadBlockProcessor_CoverageBlocks.o ReadBlockProcessor_FragmentsMap.o ReadBlockProcessor_TandemJunctions.o covTools.o main.o swEngine.o synthReadGenerator.o -fopenmp -DSPLICEWIZ -L/home/biocbuild/R/R-4.3.0/lib -lR installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-SpliceWiz/00new/SpliceWiz/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpliceWiz)