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This page was generated on 2023-05-26 06:18:16 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
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BUILD results for SpeCond on kunpeng2


To the developers/maintainers of the SpeCond package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpeCond.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1951/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpeCond 1.55.0  (landing page)
Florence Cavalli
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/SpeCond
git_branch: devel
git_last_commit: 2500a62
git_last_commit_date: 2023-04-25 13:49:55 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: SpeCond
Version: 1.55.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data SpeCond
StartedAt: 2023-05-26 02:09:17 -0000 (Fri, 26 May 2023)
EndedAt: 2023-05-26 02:10:14 -0000 (Fri, 26 May 2023)
EllapsedTime: 57.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data SpeCond
###
##############################################################################
##############################################################################


* checking for file ‘SpeCond/DESCRIPTION’ ... OK
* preparing ‘SpeCond’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SpeCond.Rnw’ using Sweave
Loading required package: mclust
Package 'mclust' version 6.0.0
Type 'citation("mclust")' for citing this R package in publications.
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: fields
Loading required package: spam
Spam version 2.9-1 (2022-08-07) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: ‘spam’

The following objects are masked from ‘package:base’:

    backsolve, forwardsolve

Loading required package: viridis
Loading required package: viridisLite

Try help(fields) to get started.
Loading required package: hwriter
Loading required package: RColorBrewer
The full result html page 'E_Example_SpeCond_results.html' will be created in the current directory '/tmp/RtmprIaEdq'
The directory 'E_General_Result' has been created.
The index html page 'E_index_example_SpeCond_Results.html' will be created in the current directory: '/tmp/RtmprIaEdq'
The directory 'E_Single_result_pages' has been created.
The full result html page 'S1_simulatedSpeCondData_results.html' will be created in the current directory '/tmp/RtmprIaEdq'
The directory 'S1_General_Result' has been created.
The index html page 'S1_index_simulatedSpeCondData.html' will be created in the current directory: '/tmp/RtmprIaEdq'
The directory 'S1_Single_result_pages' has been created.
The index html page 'S2_index_simulatedSpeCondData.html' will be created in the current directory: '/tmp/RtmprIaEdq'
The directory 'S2_Single_result_pages' has been created.
The full result html page 'S2_simulatedSpeCondData_results.html' will be created in the current directory '/tmp/RtmprIaEdq'
The directory 'S2_General_Result' has been created.
The index html page 'S3_index_simulatedSpeCondData.html' will be created in the current directory: '/tmp/RtmprIaEdq'
The directory 'S3_Single_result_pages' has been created.
The full result html page 'S3_simulatedSpeCondData_results.html' will be created in the current directory '/tmp/RtmprIaEdq'
The directory 'S3_General_Result' has been created.
Error: processing vignette 'SpeCond.Rnw' failed with diagnostics:
unable to run pdflatex on 'SpeCond.tex'
LaTeX errors:
! LaTeX Error: File `a4wide.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.8 \usepackage
               {verbatim}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘SpeCond.Rnw’

SUMMARY: processing the following file failed:
  ‘SpeCond.Rnw’

Error: Vignette re-building failed.
Execution halted