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This page was generated on 2023-05-26 06:18:16 -0000 (Fri, 26 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SeqArray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SeqArray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1855/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SeqArray 1.41.0 (landing page) Xiuwen Zheng
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | |||||||||
| Package: SeqArray |
| Version: 1.41.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL SeqArray |
| StartedAt: 2023-05-25 18:57:57 -0000 (Thu, 25 May 2023) |
| EndedAt: 2023-05-25 18:58:55 -0000 (Thu, 25 May 2023) |
| EllapsedTime: 57.4 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL SeqArray ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘SeqArray’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 10.3.1’ using C++ compiler: ‘g++ (GCC) 10.3.1’ g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c ConvToGDS.cpp -o ConvToGDS.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c FileMerge.cpp -o FileMerge.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c GetData.cpp -o GetData.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c Index.cpp -o Index.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c LinkSNPRelate.cpp -o LinkSNPRelate.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c Methods.cpp -o Methods.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c R_SeqArray.c -o R_SeqArray.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c ReadBySample.cpp -o ReadBySample.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c ReadByUnit.cpp -o ReadByUnit.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c ReadByVariant.cpp -o ReadByVariant.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c SeqArray.cpp -o SeqArray.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c pkg_test.cpp -o pkg_test.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c samtools_ext.c -o samtools_ext.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -DUSING_R -I'/home/biocbuild/R/R-4.3.0/site-library/gdsfmt/include' -I/usr/local/include -fPIC -g -O2 -c vectorization.c -o vectorization.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByUnit.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -L/home/biocbuild/R/R-4.3.0/lib -lR installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-SeqArray/00new/SeqArray/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SeqArray)