This page was generated on 2023-05-26 06:18:16 -0000 (Fri, 26 May 2023).
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data SIM
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* checking for file ‘SIM/DESCRIPTION’ ... OK
* preparing ‘SIM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SIM.Rnw’ using Sweave
Loading required package: quantreg
Loading required package: SparseM
Attaching package: ‘SparseM’
The following object is masked from ‘package:base’:
backsolve
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70", :
EXPR is a "factor", treated as integer.
Consider using 'switch(as.character( * ), ...)' instead.
Error: processing vignette 'SIM.Rnw' failed with diagnostics:
unable to run pdflatex on 'SIM.tex'
LaTeX errors:
! LaTeX Error: File `a4wide.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.6 \usepackage
[T1]{fontenc}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘SIM.Rnw’
SUMMARY: processing the following file failed:
‘SIM.Rnw’
Error: Vignette re-building failed.
Execution halted