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This page was generated on 2023-05-26 06:18:16 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for SIM on kunpeng2


To the developers/maintainers of the SIM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SIM.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1890/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SIM 1.71.0  (landing page)
Renee X. de Menezes
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/SIM
git_branch: devel
git_last_commit: 9142ee1
git_last_commit_date: 2023-04-25 13:47:03 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: SIM
Version: 1.71.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data SIM
StartedAt: 2023-05-26 01:54:45 -0000 (Fri, 26 May 2023)
EndedAt: 2023-05-26 01:55:29 -0000 (Fri, 26 May 2023)
EllapsedTime: 44.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data SIM
###
##############################################################################
##############################################################################


* checking for file ‘SIM/DESCRIPTION’ ... OK
* preparing ‘SIM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SIM.Rnw’ using Sweave
Loading required package: quantreg
Loading required package: SparseM

Attaching package: ‘SparseM’

The following object is masked from ‘package:base’:

    backsolve

Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Warning in switch(stain, gneg = "grey100", gpos25 = "grey90", gpos50 = "grey70",  :
  EXPR is a "factor", treated as integer.
 Consider using 'switch(as.character( * ), ...)' instead.
Error: processing vignette 'SIM.Rnw' failed with diagnostics:
unable to run pdflatex on 'SIM.tex'
LaTeX errors:
! LaTeX Error: File `a4wide.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.6 \usepackage
               [T1]{fontenc}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘SIM.Rnw’

SUMMARY: processing the following file failed:
  ‘SIM.Rnw’

Error: Vignette re-building failed.
Execution halted