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This page was generated on 2023-05-26 06:18:15 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for SCnorm on kunpeng2


To the developers/maintainers of the SCnorm package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SCnorm.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1818/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SCnorm 1.23.0  (landing page)
Rhonda Bacher
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/SCnorm
git_branch: devel
git_last_commit: f29f4e8
git_last_commit_date: 2023-04-25 14:55:27 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: SCnorm
Version: 1.23.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data SCnorm
StartedAt: 2023-05-26 01:32:59 -0000 (Fri, 26 May 2023)
EndedAt: 2023-05-26 01:35:30 -0000 (Fri, 26 May 2023)
EllapsedTime: 151.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data SCnorm
###
##############################################################################
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* checking for file ‘SCnorm/DESCRIPTION’ ... OK
* preparing ‘SCnorm’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SCnorm.Rnw’ using knitr
Error in parse(text = code, keep.source = FALSE) : 
  <text>:12:19: unexpected symbol
11:                   PrintProgressPlots = TRUE
12:                   FilterCellNum
                      ^
Warning in highr::hilight(x, format, prompt = options$prompt, markup = opts$markup) :
  the syntax of the source code is invalid; the fallback mode is used
Error: processing vignette 'SCnorm.Rnw' failed with diagnostics:
unable to run pdflatex on 'SCnorm.tex'
LaTeX errors:
! LaTeX Error: File `moreverb.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.35 ^^M
        
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘SCnorm.Rnw’

SUMMARY: processing the following file failed:
  ‘SCnorm.Rnw’

Error: Vignette re-building failed.
Execution halted