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This page was generated on 2023-05-26 06:18:14 -0000 (Fri, 26 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the Rarr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rarr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1603/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rarr 1.1.0 (landing page) Mike Smith
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | |||||||||
| Package: Rarr |
| Version: 1.1.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL Rarr |
| StartedAt: 2023-05-25 19:12:00 -0000 (Thu, 25 May 2023) |
| EndedAt: 2023-05-25 19:13:05 -0000 (Thu, 25 May 2023) |
| EllapsedTime: 65.4 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL Rarr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘Rarr’ ... ** using staged installation configure: creating ./config.status config.status: creating src/Makevars x86_CPU=false checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether C compiler accepts -msse2... no checking whether C compiler accepts -mavx2... no configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/compression_tools/blosc/lib/blosc-1.20.1/Makefile config.status: creating src/compression_tools/blosc/Makefile ** libs using C compiler: ‘gcc (GCC) 10.3.1’ make -C compression_tools/blosc make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc' make -C lib/snappy-1.1.1 make[2]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1' g++ -std=gnu++17 -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -DUSING_R -c snappy.cc g++ -std=gnu++17 -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -DUSING_R -c snappy-c.cc g++ -std=gnu++17 -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -DUSING_R -c snappy-sinksource.cc g++ -std=gnu++17 -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -DUSING_R -c snappy-stubs-internal.cc make[2]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1' make -C lib/lz4-1.9.2 make[2]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2' gcc -g -O2 -fPIC -DNLZ4_DEBUG -c lz4.c gcc -g -O2 -fPIC -DNLZ4_DEBUG -c lz4hc.c make[2]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2' make -C lib/zstd-1.4.5 make[2]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc/lib/zstd-1.4.5' gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c common/debug.c -o common/debug.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c common/entropy_common.c -o common/entropy_common.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c common/error_private.c -o common/error_private.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c common/fse_decompress.c -o common/fse_decompress.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -I. -c common/pool.c -o common/pool.o -o common/pool.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c common/threading.c -o common/threading.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c common/xxhash.c -o common/xxhash.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c common/zstd_common.c -o common/zstd_common.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/fse_compress.c -o compress/fse_compress.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/hist.c -o compress/hist.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/huf_compress.c -o compress/huf_compress.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstd_compress.c -o compress/zstd_compress.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstd_fast.c -o compress/zstd_fast.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstd_lazy.c -o compress/zstd_lazy.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstd_ldm.c -o compress/zstd_ldm.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstd_opt.c -o compress/zstd_opt.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c decompress/huf_decompress.c -o decompress/huf_decompress.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o gcc -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o make[2]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc/lib/zstd-1.4.5' make -C lib/blosc-1.20.1 all make[2]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1' gcc -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -DUSING_R -c bitshuffle-generic.c gcc -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -DUSING_R -c shuffle-generic.c gcc -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -DUSING_R -c shuffle.c gcc -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -DUSING_R -c blosclz.c gcc -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -DUSING_R -c blosc.c gcc -g -O2 -fPIC -I/usr/local/include -I/home/biocbuild/R/R-4.3.0/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -DUSING_R -c fastcopy.c make[2]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1' rm -f libblosc.a ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.2/lz4.o lib/lz4-1.9.2/lz4hc.o lib/zstd-1.4.5/common/debug.o lib/zstd-1.4.5/common/entropy_common.o lib/zstd-1.4.5/common/error_private.o lib/zstd-1.4.5/common/fse_decompress.o lib/zstd-1.4.5/common/pool.o lib/zstd-1.4.5/common/threading.o lib/zstd-1.4.5/common/xxhash.o lib/zstd-1.4.5/common/zstd_common.o lib/zstd-1.4.5/compress/fse_compress.o lib/zstd-1.4.5/compress/hist.o lib/zstd-1.4.5/compress/huf_compress.o lib/zstd-1.4.5/compress/zstd_compress.o lib/zstd-1.4.5/compress/zstd_compress_literals.o lib/zstd-1.4.5/compress/zstd_compress_sequences.o lib/zstd-1.4.5/compress/zstd_compress_superblock.o lib/zstd-1.4.5/compress/zstd_double_fast.o lib/zstd-1.4.5/compress/zstd_fast.o lib/zstd-1.4.5/compress/zstd_lazy.o lib/zstd-1.4.5/compress/zstd_ldm.o lib/zstd-1.4.5/compress/zstd_opt.o lib/zstd-1.4.5/compress/zstdmt_compress.o lib/zstd-1.4.5/decompress/huf_decompress.o lib/zstd-1.4.5/decompress/zstd_ddict.o lib/zstd-1.4.5/decompress/zstd_decompress.o lib/zstd-1.4.5/decompress/zstd_decompress_block.o ranlib libblosc.a make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/Rarr/src/compression_tools/blosc' gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -fPIC -g -O2 -c Rarr.c -o Rarr.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -fPIC -g -O2 -c bit64_conversion.c -o bit64_conversion.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -fPIC -g -O2 -c compress.c -o compress.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -fPIC -g -O2 -c decompress.c -o decompress.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -fPIC -g -O2 -c float16_conversion.c -o float16_conversion.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -g -O2 -fPIC -g -O2 -c type_conversion.c -o type_conversion.o gcc -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o Rarr.so Rarr.o bit64_conversion.o compress.o decompress.o float16_conversion.o type_conversion.o compression_tools/blosc/libblosc.a -L/home/biocbuild/R/R-4.3.0/lib -lR installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-Rarr/00new/Rarr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rarr)