Build/check report for BioC 3.18 - BUILD results for RTopper on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.3.0 (2023-04-21) -- "Already Tomorrow"	4254
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the RTopper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RTopper.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data RTopper
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* checking for file ‘RTopper/DESCRIPTION’ ... OK
* preparing ‘RTopper’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RTopper.Rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, aperm, append,
    as.data.frame, basename, cbind,
    colnames, dirname, do.call, duplicated,
    eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply,
    match, mget, order, paste, pmax,
    pmax.int, pmin, pmin.int, rank, rbind,
    rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material;
    view with 'browseVignettes()'. To cite
    Bioconductor, see 'citation("Biobase")',
    and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:utils’:

    findMatches

The following objects are masked from ‘package:base’:

    I, expand.grid, unname




Attaching package: ‘limma’

The following object is masked from ‘package:BiocGenerics’:

    plotMA

Error: processing vignette 'RTopper.Rnw' failed with diagnostics:
unable to run pdflatex on 'RTopper.tex'
LaTeX errors:
! LaTeX Error: File `comment.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.20 \usepackage
                {wrapfig, subfigure}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘RTopper.Rnw’

SUMMARY: processing the following file failed:
  ‘RTopper.Rnw’

Error: Vignette re-building failed.
Execution halted

BUILD results for RTopper on kunpeng2

Summary

Command output