##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:RBGL.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings RBGL_1.77.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/RBGL.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘RBGL/DESCRIPTION’ ... OK
* this is package ‘RBGL’ version ‘1.77.1’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  download from 'https://CRAN.R-project.org/src/contrib/PACKAGES' failed
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/bioc/src/contrib:
  download from 'https://bioconductor.org/packages/3.17/bioc/src/contrib/PACKAGES' failed
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/src/contrib:
  download from 'https://bioconductor.org/packages/3.17/data/annotation/src/contrib/PACKAGES' failed
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/src/contrib:
  download from 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/PACKAGES' failed
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RBGL’ can be installed ... OK
* used C++ compiler: ‘g++ (GCC) 10.3.1’
* checking installed package size ... NOTE
  installed size is 35.1Mb
  sub-directories of 1Mb or more:
    libs       32.5Mb
    old_boost   1.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘methods’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘RBGL.Rmd’ using ‘UTF-8’... failed to complete the test
 ERROR
Errors in running code in vignettes:
when running code in ‘RBGL.Rmd’
  ...
> proc.time()
   user  system elapsed 
  0.170   0.027   0.193 

... incomplete output.  Crash?

* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... ERROR
Rd conversion errors:
Converting parsed Rd's to LaTeX Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Error in writeLines(x, con, useBytes = TRUE, ...) : 
  Error writing to connection:  No space left on device
* DONE

Status: 2 ERRORs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/RBGL.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL RBGL
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘RBGL’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c bbc.cpp -o bbc.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from bbc.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c cliques.cpp -o cliques.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from cliques.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c clusteringCoef.cpp -o clusteringCoef.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c dominatorTree.cpp -o dominatorTree.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c hcs.cpp -o hcs.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from hcs.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c incrConnComp.cpp -o incrConnComp.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c interfaces.cpp -o interfaces.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c minST.cpp -o minST.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from minST.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c mincut.cpp -o mincut.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from mincut.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c ordering.cpp -o ordering.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from ordering.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/king_ordering.hpp:18,
                 from ordering.cpp:9:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c planar.cpp -o planar.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from planar.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c registerSigHandlers.cpp -o registerSigHandlers.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c shortestPath.cpp -o shortestPath.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c sna.cpp -o sna.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from sna.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c transitive_closure.cpp -o transitive_closure.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/graph_concepts.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/depth_first_search.hpp:18,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/strong_components.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:17,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:21,
                 from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/config/no_tr1/memory.hpp:21,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/bind.hpp:26,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/transitive_closure.hpp:16,
                 from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c wavefront.cpp -o wavefront.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from RBGL.hpp:38,
                 from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/property_map/property_map.hpp:598,
                 from RBGL.hpp:17,
                 from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
   57 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o registerSigHandlers.o shortestPath.o sna.o transitive_closure.o wavefront.o -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-RBGL/00new/RBGL/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RBGL)