This page was generated on 2023-05-26 06:18:09 -0000 (Fri, 26 May 2023).
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data GraphPAC
###
##############################################################################
##############################################################################
* checking for file ‘GraphPAC/DESCRIPTION’ ... OK
* preparing ‘GraphPAC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GraphPAC.Rnw’ using Sweave
Loading required package: iPAC
Loading required package: gdata
Attaching package: ‘gdata’
The following object is masked from ‘package:stats’:
nobs
The following object is masked from ‘package:utils’:
object.size
The following object is masked from ‘package:base’:
startsWith
Loading required package: scatterplot3d
Loading required package: Biostrings
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following object is masked from ‘package:gdata’:
combine
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:gdata’:
first, first<-
The following object is masked from ‘package:utils’:
findMatches
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Loading required package: IRanges
Attaching package: ‘IRanges’
The following object is masked from ‘package:gdata’:
trim
Loading required package: XVector
Loading required package: GenomeInfoDb
Attaching package: ‘Biostrings’
The following object is masked from ‘package:base’:
strsplit
Loading required package: multtest
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: igraph
Attaching package: ‘igraph’
The following object is masked from ‘package:Biostrings’:
union
The following object is masked from ‘package:XVector’:
path
The following object is masked from ‘package:IRanges’:
union
The following object is masked from ‘package:S4Vectors’:
union
The following objects are masked from ‘package:BiocGenerics’:
normalize, path, union
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
Loading required package: TSP
Loading required package: RMallow
Loading required package: combinat
Attaching package: ‘combinat’
The following object is masked from ‘package:utils’:
combn
Error: processing vignette 'GraphPAC.Rnw' failed with diagnostics:
unable to run pdflatex on 'GraphPAC.tex'
LaTeX errors:
! LaTeX Error: File `subfigure.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.12 \usepackage
{float}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘GraphPAC.Rnw’
SUMMARY: processing the following file failed:
‘GraphPAC.Rnw’
Error: Vignette re-building failed.
Execution halted