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This page was generated on 2023-05-26 06:18:09 -0000 (Fri, 26 May 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
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To the developers/maintainers of the GGPA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GGPA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 823/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GGPA 1.13.1 (landing page) Dongjun Chung
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | |||||||||
Package: GGPA |
Version: 1.13.1 |
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data GGPA |
StartedAt: 2023-05-25 22:43:10 -0000 (Thu, 25 May 2023) |
EndedAt: 2023-05-25 22:44:56 -0000 (Thu, 25 May 2023) |
EllapsedTime: 105.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data GGPA ### ############################################################################## ############################################################################## * checking for file ‘GGPA/DESCRIPTION’ ... OK * preparing ‘GGPA’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GGPA-example.Rnw’ using Sweave Loading required package: GGally Loading required package: ggplot2 Registered S3 method overwritten by 'GGally': method from +.gg ggplot2 Loading required package: network ‘network’ 1.18.1 (2023-01-24), part of the Statnet Project * ‘news(package="network")’ for changes since last version * ‘citation("network")’ for citation information * ‘https://statnet.org’ for help, support, and other information Loading required package: sna Loading required package: statnet.common Attaching package: ‘statnet.common’ The following objects are masked from ‘package:base’: attr, order sna: Tools for Social Network Analysis Version 2.7-1 created on 2023-01-24. copyright (c) 2005, Carter T. Butts, University of California-Irvine For citation information, type citation("sna"). Type help(package="sna") to get started. Loading required package: scales Loading required package: matrixStats Warning in plot.window(...) : "size" is not a graphical parameter Warning in plot.xy(xy, type, ...) : "size" is not a graphical parameter Warning in axis(side = side, at = at, labels = labels, ...) : "size" is not a graphical parameter Warning in axis(side = side, at = at, labels = labels, ...) : "size" is not a graphical parameter Warning in box(...) : "size" is not a graphical parameter Warning in title(...) : "size" is not a graphical parameter Info: Uniform prior will be used for the phenotype graph in the estimation. Info: Number of GWAS data: 7 Info: Some SNPs have p-values close to zero. Info: Number of SNPs with p-values close to zero: 234 Info: p-values for these SNPs are set to 1e-10 Burn in iterations... Burn-in iteration: 100 / 200 The last 100 iter= 0.2 min, Est. Time to go= 0.2 min Burn-in iteration: 200 / 200 The last 100 iter= 0.2 min, Est. Time to go= 0 min Main MCMC iterations... Burn-in iteration: 100 / 200 The last 100 iter= 0.2 min, Est. Time to go= 0.2 min Burn-in iteration: 200 / 200 The last 100 iter= 0.2 min, Est. Time to go= 0 min Info: Association mapping for each phenotype. Info: Association mapping based on the global FDR control at level 0.1. Info: Association mapping for specified i & j phenotype pair. Info: Association mapping based on the global FDR control at level 0.1. Error: processing vignette 'GGPA-example.Rnw' failed with diagnostics: unable to run pdflatex on 'GGPA-example.tex' LaTeX errors: ! LaTeX Error: File `subfigure.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.16 ^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘GGPA-example.Rnw’ SUMMARY: processing the following file failed: ‘GGPA-example.Rnw’ Error: Vignette re-building failed. Execution halted