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This page was generated on 2023-05-26 06:18:08 -0000 (Fri, 26 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the EpiMix package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EpiMix.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 634/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EpiMix 1.3.0 (landing page) Yuanning Zheng
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: EpiMix |
| Version: 1.3.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data EpiMix |
| StartedAt: 2023-05-25 22:11:41 -0000 (Thu, 25 May 2023) |
| EndedAt: 2023-05-25 22:32:49 -0000 (Thu, 25 May 2023) |
| EllapsedTime: 1268.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data EpiMix ### ############################################################################## ############################################################################## * checking for file ‘EpiMix/DESCRIPTION’ ... OK * preparing ‘EpiMix’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Methylation_Modeling.Rmd’ using rmarkdown trying URL 'https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/core_K27ac/jointModel/final/E096_18_core_K27ac_hg38lift_mnemonics.bed.gz' Content type 'application/x-gzip' length 3835377 bytes (3.7 MB) ================================================== downloaded 3.7 MB trying URL 'https://gdac.broadinstitute.org/runs/stddata__latest/data/OV/20160128/gdac.broadinstitute.org_OV.Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2016012800.0.0.tar.gz' Content type 'application/x-gzip' length 152968396 bytes (145.9 MB) ================================================== downloaded 145.9 MB trying URL 'https://gdac.broadinstitute.org/runs/stddata__latest/data/OV/20160128/gdac.broadinstitute.org_OV.Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.Level_3.2016012800.0.0.tar.gz' Content type 'application/x-gzip' length 51525820 bytes (49.1 MB) ================================================== downloaded 49.1 MB trying URL 'https://gdac.broadinstitute.org/runs/stddata__latest/data/OV/20160128/gdac.broadinstitute.org_OV.Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data.Level_3.2016012800.0.0.tar.gz' Content type 'application/x-gzip' length 36996192 bytes (35.3 MB) ================================================== downloaded 35.3 MB trying URL 'https://gdac.broadinstitute.org/runs/stddata__latest/data/OV/20160128/gdac.broadinstitute.org_OV.miRseq_Preprocess.Level_3.2016012800.0.0.tar.gz' Content type 'application/x-gzip' length 2663096 bytes (2.5 MB) ================================================== downloaded 2.5 MB Warning in doTryCatch(return(expr), name, parentenv, handler) : "offest" is not a graphical parameter Quitting from lines 465-484 [unnamed-chunk-32] (Methylation_Modeling.Rmd) Error: processing vignette 'Methylation_Modeling.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'mcols': Failed to connect to egg2.wustl.edu port 443 after 129764 ms: Connection timed out --- failed re-building ‘Methylation_Modeling.Rmd’ SUMMARY: processing the following file failed: ‘Methylation_Modeling.Rmd’ Error: Vignette re-building failed. Execution halted