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This page was generated on 2023-05-26 06:18:06 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
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BUILD results for CINdex on kunpeng2


To the developers/maintainers of the CINdex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CINdex.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 340/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CINdex 1.29.0  (landing page)
Yuriy Gusev
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/CINdex
git_branch: devel
git_last_commit: 57f0205
git_last_commit_date: 2023-04-25 14:45:52 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: CINdex
Version: 1.29.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex
StartedAt: 2023-05-25 21:16:56 -0000 (Thu, 25 May 2023)
EndedAt: 2023-05-25 21:20:36 -0000 (Thu, 25 May 2023)
EllapsedTime: 220.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex
###
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* checking for file ‘CINdex/DESCRIPTION’ ... OK
* preparing ‘CINdex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToDownloadCytobandInfo.Rmd’ using rmarkdown
--- finished re-building ‘HowToDownloadCytobandInfo.Rmd’

--- re-building ‘PrepareInputData.Rmd’ using rmarkdown

Quitting from lines 33-45 [unnamed-chunk-1] (PrepareInputData.Rmd)
Error: processing vignette 'PrepareInputData.Rmd' failed with diagnostics:
there is no package called 'pd.genomewidesnp.6'
--- failed re-building ‘PrepareInputData.Rmd’

--- re-building ‘CINdex.Rnw’ using knitr
Error: processing vignette 'CINdex.Rnw' failed with diagnostics:
unable to run pdflatex on 'CINdex.tex'
LaTeX errors:
! LaTeX Error: File `ulem.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.58 \usepackage
                {pdfpages}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘CINdex.Rnw’

SUMMARY: processing the following files failed:
  ‘PrepareInputData.Rmd’ ‘CINdex.Rnw’

Error: Vignette re-building failed.
Execution halted