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This page was generated on 2023-05-26 06:18:04 -0000 (Fri, 26 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4254
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BUILD results for BadRegionFinder on kunpeng2


To the developers/maintainers of the BadRegionFinder package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BadRegionFinder.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 115/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BadRegionFinder 1.29.0  (landing page)
Sarah Sandmann
Snapshot Date: 2023-05-25 13:29:39 -0000 (Thu, 25 May 2023)
git_url: https://git.bioconductor.org/packages/BadRegionFinder
git_branch: devel
git_last_commit: a50354d
git_last_commit_date: 2023-04-25 14:45:57 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: BadRegionFinder
Version: 1.29.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data BadRegionFinder
StartedAt: 2023-05-25 20:16:55 -0000 (Thu, 25 May 2023)
EndedAt: 2023-05-25 20:18:57 -0000 (Thu, 25 May 2023)
EllapsedTime: 122.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data BadRegionFinder
###
##############################################################################
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* checking for file ‘BadRegionFinder/DESCRIPTION’ ... OK
* preparing ‘BadRegionFinder’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘BadRegionFinder.Rnw’ using Sweave
Determine Coverage
Sample Test2_454
Sample Test2_ion
Determine target bases
Combine Information
Chromosome: 1
Chromosome: 2
Chromosome: 3
Chromosome: 4
Chromosome: 5
Chromosome: 6
Chromosome: 7
Chromosome: 8
Chromosome: 9
Chromosome: 10
Chromosome: 11
Chromosome: 12
Chromosome: 13
Chromosome: 14
Chromosome: 15
Chromosome: 16
Chromosome: 17
Chromosome: 18
Chromosome: 19
Chromosome: 20
Chromosome: 21
Chromosome: 22
Chromosome: X
Chromosome: Y
Chromosome: MT
Analyzing Chromosome 1
Analyzing Chromosome 2
Analyzing Chromosome 3
Analyzing Chromosome 4
Analyzing Chromosome 5
Analyzing Chromosome 6
Analyzing Chromosome 7
Analyzing Chromosome 8
Analyzing Chromosome 9
Analyzing Chromosome 10
Analyzing Chromosome 11
Analyzing Chromosome 12
Analyzing Chromosome 13
Analyzing Chromosome 14
Analyzing Chromosome 15
Analyzing Chromosome 16
Analyzing Chromosome 17
Analyzing Chromosome 18
Analyzing Chromosome 19
Analyzing Chromosome 20
Analyzing Chromosome 21
Analyzing Chromosome 22
Analyzing Chromosome 23
Analyzing Chromosome 24
Analyzing Chromosome 25
Analyze Chromosome 1
Analyze Chromosome 2
Analyze Chromosome 3
Analyze Chromosome 4
Analyze Chromosome 5
Analyze Chromosome 6
Analyze Chromosome 7
Analyze Chromosome 8
Analyze Chromosome 9
Analyze Chromosome 10
Analyze Chromosome 11
Analyze Chromosome 12
Analyze Chromosome 13
Analyze Chromosome 14
Analyze Chromosome 15
Analyze Chromosome 16
Analyze Chromosome 17
Analyze Chromosome 18
Analyze Chromosome 19
Analyze Chromosome 20
Analyze Chromosome 21
Analyze Chromosome 22
Analyze Chromosome 23
Analyze Chromosome 24
Analyze Chromosome 25
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"
Analyzing Chromosome 1
Analyzing Chromosome 2
Analyzing Chromosome 3
Analyzing Chromosome 4
Analyzing Chromosome 5
Analyzing Chromosome 6
Analyzing Chromosome 7
Analyzing Chromosome 8
Analyzing Chromosome 9
Analyzing Chromosome 10
Analyzing Chromosome 11
Analyzing Chromosome 12
Analyzing Chromosome 13
Analyzing Chromosome 14
Analyzing Chromosome 15
Analyzing Chromosome 16
Analyzing Chromosome 17
Analyzing Chromosome 18
Analyzing Chromosome 19
Analyzing Chromosome 20
Analyzing Chromosome 21
Analyzing Chromosome 22
Analyzing Chromosome 23
Analyzing Chromosome 24
Analyzing Chromosome 25
Analyzing Chromosome 1
Analyzing Chromosome 2
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"
Analyzing Chromosome 3
Analyzing Chromosome 4
Analyzing Chromosome 5
Analyzing Chromosome 6
Analyzing Chromosome 7
Analyzing Chromosome 8
Analyzing Chromosome 9
Analyzing Chromosome 10
Analyzing Chromosome 11
Analyzing Chromosome 12
Analyzing Chromosome 13
Analyzing Chromosome 14
Analyzing Chromosome 15
Analyzing Chromosome 16
Analyzing Chromosome 17
Analyzing Chromosome 18
Analyzing Chromosome 19
Analyzing Chromosome 20
Analyzing Chromosome 21
Analyzing Chromosome 22
Analyzing Chromosome 23
Analyzing Chromosome 24
Analyzing Chromosome 25
Analyzing Chromosome 2
Analyzing Chromosome 3
Analyzing Chromosome 4
Analyzing Chromosome 5
Analyzing Chromosome 6
Analyzing Chromosome 7
Analyzing Chromosome 8
Analyzing Chromosome 9
Analyzing Chromosome 10
Analyzing Chromosome 11
Analyzing Chromosome 12
Analyzing Chromosome 13
Analyzing Chromosome 14
Analyzing Chromosome 15
Analyzing Chromosome 16
Analyzing Chromosome 17
Analyzing Chromosome 18
Analyzing Chromosome 19
Analyzing Chromosome 20
Analyzing Chromosome 21
Analyzing Chromosome 22
Analyzing Chromosome 23
Analyzing Chromosome 24
Analyzing Chromosome 25
Error: processing vignette 'BadRegionFinder.Rnw' failed with diagnostics:
unable to run pdflatex on 'BadRegionFinder.tex'
LaTeX errors:
! LaTeX Error: File `textpos.sty' not found.

Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)

! Emergency stop.
<read *> 
         
l.9 \usepackage
               {amssymb}^^M
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘BadRegionFinder.Rnw’

SUMMARY: processing the following file failed:
  ‘BadRegionFinder.Rnw’

Error: Vignette re-building failed.
Execution halted