| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-05-26 06:18:05 -0000 (Fri, 26 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4254 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the BSgenome package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenome.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 237/2197 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BSgenome 1.69.0 (landing page) Hervé Pagès
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | |||||||||
| Package: BSgenome |
| Version: 1.69.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:BSgenome.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings BSgenome_1.69.0.tar.gz |
| StartedAt: 2023-05-26 04:31:48 -0000 (Fri, 26 May 2023) |
| EndedAt: 2023-05-26 04:31:57 -0000 (Fri, 26 May 2023) |
| EllapsedTime: 9.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: BSgenome.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:BSgenome.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings BSgenome_1.69.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/BSgenome.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* this is package ‘BSgenome’ version ‘1.69.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘XtraSNPlocs.Hsapiens.dbSNP144.GRCh38’
Depends: includes the non-default packages:
'BiocGenerics', 'S4Vectors', 'IRanges', 'GenomeInfoDb',
'GenomicRanges', 'Biostrings', 'rtracklayer'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.18-bioc/meat/BSgenome.Rcheck/00check.log’
for details.