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This page was generated on 2023-06-06 11:00:45 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
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INSTALL results for wppi on kunpeng2


To the developers/maintainers of the wppi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wppi.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 2181/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
wppi 1.9.0  (landing page)
Ana Galhoz
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/wppi
git_branch: devel
git_last_commit: 64a68df
git_last_commit_date: 2023-04-25 15:28:27 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    TIMEOUT  skipped

Summary

Package: wppi
Version: 1.9.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL wppi
StartedAt: 2023-06-05 08:38:15 -0000 (Mon, 05 Jun 2023)
EndedAt: 2023-06-05 08:38:27 -0000 (Mon, 05 Jun 2023)
EllapsedTime: 11.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL wppi
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘wppi’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:18] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Contains 1 files.
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:18] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Pandoc version: `3.1.2`.
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:18] [TRACE]   [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2023-06-05 08:38:22] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-06-05 08:38:22] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:22] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2023-06-05 08:38:22] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-06-05 08:38:22] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2023-06-05 08:38:22] [TRACE]   [OmnipathR] Contains 1 files.
[2023-06-05 08:38:22] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-06-05 08:38:22] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-06-05 08:38:22] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:22] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] Pandoc version: `3.1.2`.
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:23] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:26] [INFO]    [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`.
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`.
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Contains 1 files.
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:26] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`.
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Pandoc version: `3.1.2`.
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Reading JSON from `/home/biocbuild/R/R-4.3.0/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2023-06-05 08:38:26] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (wppi)