| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:44 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the unifiedWMWqPCR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/unifiedWMWqPCR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 2139/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| unifiedWMWqPCR 1.37.0 (landing page) Joris Meys
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | |||||||||
| Package: unifiedWMWqPCR |
| Version: 1.37.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings unifiedWMWqPCR_1.37.0.tar.gz |
| StartedAt: 2023-06-06 09:07:31 -0000 (Tue, 06 Jun 2023) |
| EndedAt: 2023-06-06 09:08:25 -0000 (Tue, 06 Jun 2023) |
| EllapsedTime: 54.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: unifiedWMWqPCR.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings unifiedWMWqPCR_1.37.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/unifiedWMWqPCR.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘unifiedWMWqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘unifiedWMWqPCR’ version ‘1.37.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘unifiedWMWqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Documented arguments not in \usage in documentation object 'getEstimate':
‘...’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘unifiedWMWqPCR.Rnw’ using ‘UTF-8’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/home/biocbuild/bbs-3.18-bioc/meat/unifiedWMWqPCR.Rcheck/00check.log’
for details.
unifiedWMWqPCR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL unifiedWMWqPCR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘unifiedWMWqPCR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘order’ from package ‘base’ in package ‘unifiedWMWqPCR’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (unifiedWMWqPCR)
unifiedWMWqPCR.Rcheck/unifiedWMWqPCR-Ex.timings
| name | user | system | elapsed | |
| NBdata | 0.053 | 0.004 | 0.057 | |
| as.matrix.uwmwEstimate | 0.518 | 0.032 | 0.551 | |
| as.matrix.uwmwRes | 0.498 | 0.004 | 0.503 | |
| forestplot-methods | 0.649 | 0.011 | 0.662 | |
| getEstimate-methods | 0.550 | 0.020 | 0.569 | |
| plot | 0.554 | 0.004 | 0.559 | |
| sort_uwmwRes | 0.487 | 0.000 | 0.487 | |
| uWMW-methods | 1.005 | 0.016 | 1.022 | |
| uwmw_Accessors | 0.498 | 0.004 | 0.502 | |
| uwmw_Extract | 0.493 | 0.024 | 0.517 | |
| volcanopar | 0 | 0 | 0 | |
| volcanoplot-methods | 0.485 | 0.000 | 0.486 | |