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This page was generated on 2023-06-06 11:00:44 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
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CHECK results for tigre on kunpeng2


To the developers/maintainers of the tigre package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tigre.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 2065/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tigre 1.55.0  (landing page)
Antti Honkela
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/tigre
git_branch: devel
git_last_commit: 52d8841
git_last_commit_date: 2023-04-25 13:50:40 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: tigre
Version: 1.55.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:tigre.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings tigre_1.55.0.tar.gz
StartedAt: 2023-06-06 08:32:24 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 08:42:01 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 576.9 seconds
RetCode: 0
Status:   OK  
CheckDir: tigre.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:tigre.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings tigre_1.55.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/tigre.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘tigre/DESCRIPTION’ ... OK
* this is package ‘tigre’ version ‘1.55.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tigre’ can be installed ... OK
* used C compiler: ‘gcc (GCC) 10.3.1’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
processData 7.176  0.207   7.394
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘tigre.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/tigre.Rcheck/00check.log’
for details.



Installation output

tigre.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL tigre
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘tigre’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -c miscCFunctions.c -o miscCFunctions.o
gcc -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o tigre.so miscCFunctions.o -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-tigre/00new/tigre/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tigre)

Tests output


Example timings

tigre.Rcheck/tigre-Ex.timings

nameusersystemelapsed
ExpressionTimeSeries-class0.0010.0000.002
GPLearn1.3800.0961.548
GPModel-class0.0000.0000.001
GPPlot000
GPRankTargets0.0000.0000.001
SCGoptim000
expTransform000
export000
generateModels0.0000.0000.001
gpsimCreate000
kernCompute0.0010.0000.000
kernCreate0.0080.0000.008
kernDiagGradX0.0010.0000.001
kernGradient0.0010.0000.001
lnDiffErfs0.0010.0000.000
modelDisplay0.1060.0000.106
modelExpandParam000
modelExtractParam0.1180.0000.118
modelGradient0.1450.0000.146
modelTieParam0.0070.0000.007
optimiDefaultConstraint000
plotTimeseries0.1570.0000.157
processData7.1760.2077.394
scoreList-class0.0010.0000.000
tigre-package000