Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:41 -0000 (Tue, 06 Jun 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the scDblFinder package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scDblFinder.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1804/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scDblFinder 1.15.0 (landing page) Pierre-Luc Germain
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | |||||||||
Package: scDblFinder |
Version: 1.15.0 |
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data scDblFinder |
StartedAt: 2023-06-05 14:44:28 -0000 (Mon, 05 Jun 2023) |
EndedAt: 2023-06-05 14:47:44 -0000 (Mon, 05 Jun 2023) |
EllapsedTime: 196.3 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data scDblFinder ### ############################################################################## ############################################################################## * checking for file ‘scDblFinder/DESCRIPTION’ ... OK * preparing ‘scDblFinder’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘computeDoubletDensity.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection Quitting from lines 27-32 [unnamed-chunk-2] (computeDoubletDensity.Rmd) Error: processing vignette 'computeDoubletDensity.Rmd' failed with diagnostics: failed to load resource name: AH73905 title: Ensembl 97 EnsDb for Mus musculus reason: database disk image is malformed --- failed re-building ‘computeDoubletDensity.Rmd’ --- re-building ‘findDoubletClusters.Rmd’ using rmarkdown Quitting from lines 27-32 [unnamed-chunk-2] (findDoubletClusters.Rmd) Error: processing vignette 'findDoubletClusters.Rmd' failed with diagnostics: failed to load resource name: AH73905 title: Ensembl 97 EnsDb for Mus musculus reason: database disk image is malformed --- failed re-building ‘findDoubletClusters.Rmd’ --- re-building ‘introduction.Rmd’ using rmarkdown --- finished re-building ‘introduction.Rmd’ --- re-building ‘recoverDoublets.Rmd’ using rmarkdown --- finished re-building ‘recoverDoublets.Rmd’ --- re-building ‘scATAC.Rmd’ using rmarkdown --- finished re-building ‘scATAC.Rmd’ --- re-building ‘scDblFinder.Rmd’ using rmarkdown --- finished re-building ‘scDblFinder.Rmd’ SUMMARY: processing the following files failed: ‘computeDoubletDensity.Rmd’ ‘findDoubletClusters.Rmd’ Error: Vignette re-building failed. Execution halted