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This page was generated on 2023-06-06 11:00:40 -0000 (Tue, 06 Jun 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the rGREAT package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rGREAT.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1679/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
rGREAT 2.3.0 (landing page) Zuguang Gu
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | |||||||||
Package: rGREAT |
Version: 2.3.0 |
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rGREAT |
StartedAt: 2023-06-05 14:19:42 -0000 (Mon, 05 Jun 2023) |
EndedAt: 2023-06-05 14:25:57 -0000 (Mon, 05 Jun 2023) |
EllapsedTime: 375.6 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data rGREAT ### ############################################################################## ############################################################################## * checking for file ‘rGREAT/DESCRIPTION’ ... OK * preparing ‘rGREAT’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘local-GREAT.Rmd’ using rmarkdown --- finished re-building ‘local-GREAT.Rmd’ --- re-building ‘online-GREAT.Rmd’ using rmarkdown --- finished re-building ‘online-GREAT.Rmd’ --- re-building ‘other-docs.Rmd’ using rmarkdown --- finished re-building ‘other-docs.Rmd’ --- re-building ‘other-geneset-databases.Rmd’ using rmarkdown --- finished re-building ‘other-geneset-databases.Rmd’ --- re-building ‘other-organisms.Rmd’ using rmarkdown trying URL 'https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCF_011762595.1/download?include_annotation_type=GENOME_GFF,SEQUENCE_REPORT&filename=GCF_011762595.1.zip' downloaded 15.0 MB [/tmp/RtmpWr0fGA/GCF_011762595.1.zip] End-of-central-directory signature not found. Either this file is not a zipfile, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment will be found on the last disk(s) of this archive. Quitting from lines 118-120 [unnamed-chunk-10] (other-organisms.Rmd) Error: processing vignette 'other-organisms.Rmd' failed with diagnostics: attempt to set index 1/1 in SET_STRING_ELT --- failed re-building ‘other-organisms.Rmd’ SUMMARY: processing the following file failed: ‘other-organisms.Rmd’ Error: Vignette re-building failed. Execution halted