| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:38 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the peco package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/peco.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1472/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| peco 1.13.0 (landing page) Chiaowen Joyce Hsiao
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
| Package: peco |
| Version: 1.13.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:peco.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings peco_1.13.0.tar.gz |
| StartedAt: 2023-06-06 03:59:49 -0000 (Tue, 06 Jun 2023) |
| EndedAt: 2023-06-06 04:15:45 -0000 (Tue, 06 Jun 2023) |
| EllapsedTime: 955.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: peco.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:peco.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings peco_1.13.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/peco.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘peco/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘peco’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘peco’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
fit_trendfilter 41.570 1.026 54.720
data_transform_quantile 1.254 0.236 15.636
cycle_npreg_outsample 1.303 0.075 184.999
fit_loess 0.571 0.055 13.301
fit_bspline 0.527 0.018 12.884
fit_cyclical_many 0.462 0.054 228.361
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘vignette.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
peco.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL peco ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘peco’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (peco)
peco.Rcheck/peco-Ex.timings
| name | user | system | elapsed | |
| circ_dist | 0.015 | 0.004 | 0.019 | |
| cycle_npreg_insample | 0.001 | 0.000 | 0.000 | |
| cycle_npreg_outsample | 1.303 | 0.075 | 184.999 | |
| data_transform_quantile | 1.254 | 0.236 | 15.636 | |
| fit_bspline | 0.527 | 0.018 | 12.884 | |
| fit_cyclical_many | 0.462 | 0.054 | 228.361 | |
| fit_loess | 0.571 | 0.055 | 13.301 | |
| fit_trendfilter | 41.570 | 1.026 | 54.720 | |
| intensity2circle | 0.240 | 0.012 | 0.253 | |
| rotation | 0.048 | 0.000 | 0.047 | |
| shift_origin | 0.003 | 0.000 | 0.003 | |