Back to Build/check report for BioC 3.18:   simplified   long
ABCDEFGHIJKLMN[O]PQRSTUVWXYZ

This page was generated on 2023-06-06 11:00:37 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for omicsPrint on kunpeng2


To the developers/maintainers of the omicsPrint package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/omicsPrint.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1400/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
omicsPrint 1.21.0  (landing page)
Davy Cats
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/omicsPrint
git_branch: devel
git_last_commit: 7630b12
git_last_commit_date: 2023-04-25 14:58:23 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: omicsPrint
Version: 1.21.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data omicsPrint
StartedAt: 2023-06-05 13:33:26 -0000 (Mon, 05 Jun 2023)
EndedAt: 2023-06-05 13:36:28 -0000 (Mon, 05 Jun 2023)
EllapsedTime: 181.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data omicsPrint
###
##############################################################################
##############################################################################


* checking for file ‘omicsPrint/DESCRIPTION’ ... OK
* preparing ‘omicsPrint’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘omicsPrint.Rmd’ using rmarkdown
trying URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100940/matrix/GSE100940_series_matrix.txt.gz'
Content type 'unknown' length 50832972 bytes (48.5 MB)
==================================================

Quitting from lines 251-261 [downloadretry] (omicsPrint.Rmd)
Error: processing vignette 'omicsPrint.Rmd' failed with diagnostics:
cannot open URL 'ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100940/matrix/GSE100940_series_matrix.txt.gz'
--- failed re-building ‘omicsPrint.Rmd’

SUMMARY: processing the following file failed:
  ‘omicsPrint.Rmd’

Error: Vignette re-building failed.
Execution halted