Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:37 -0000 (Tue, 06 Jun 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the nullranges package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1381/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
nullranges 1.7.4 (landing page) Michael Love
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
Package: nullranges |
Version: 1.7.4 |
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings nullranges_1.7.4.tar.gz |
StartedAt: 2023-06-06 03:20:34 -0000 (Tue, 06 Jun 2023) |
EndedAt: 2023-06-06 03:32:04 -0000 (Tue, 06 Jun 2023) |
EllapsedTime: 690.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: nullranges.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings nullranges_1.7.4.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/nullranges.Rcheck’ * using R version 4.3.0 (2023-04-21) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (GCC) 10.3.1 GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * checking for file ‘nullranges/DESCRIPTION’ ... OK * this is package ‘nullranges’ version ‘1.7.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘nullranges’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotCovariate 4.966 0.331 6.119 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘bootRanges.Rmd’ using ‘UTF-8’... OK ‘matchRanges.Rmd’ using ‘UTF-8’... OK ‘matching_ginteractions.Rmd’ using ‘UTF-8’... OK ‘matching_granges.Rmd’ using ‘UTF-8’... OK ‘matching_pool_set.Rmd’ using ‘UTF-8’... OK ‘nullranges.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
nullranges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL nullranges ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘nullranges’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullranges)
nullranges.Rcheck/tests/testthat.Rout
R version 4.3.0 (2023-04-21) -- "Already Tomorrow" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(nullranges) > > test_check("nullranges") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ] > > proc.time() user system elapsed 22.526 1.084 25.619
nullranges.Rcheck/nullranges-Ex.timings
name | user | system | elapsed | |
MatchedDataFrame | 3.324 | 0.168 | 3.484 | |
MatchedGInteractions | 0.709 | 0.055 | 0.825 | |
MatchedGRanges | 0.614 | 0.040 | 0.646 | |
bootRanges | 0.418 | 0.004 | 0.423 | |
combnCov | 0.004 | 0.000 | 0.005 | |
covariates | 0.214 | 0.008 | 0.222 | |
focal | 0.206 | 0.012 | 0.219 | |
indices | 1.259 | 0.144 | 1.406 | |
makeExampleMatchedDataSet | 0.850 | 0.036 | 1.038 | |
matchRanges | 1.848 | 0.048 | 1.992 | |
matched | 0.207 | 0.004 | 0.214 | |
matchedClass | 0.207 | 0.012 | 0.219 | |
matchedData | 0.196 | 0.008 | 0.205 | |
method | 0.190 | 0.000 | 0.191 | |
oneRegionSegment | 0.506 | 0.027 | 1.195 | |
overview | 0.235 | 0.012 | 0.435 | |
plotCovariate | 4.966 | 0.331 | 6.119 | |
plotPropensity | 1.844 | 0.112 | 1.957 | |
plotSegment | 2.046 | 0.164 | 2.218 | |
pool | 0.188 | 0.004 | 0.188 | |
reduceSegment | 0.325 | 0.008 | 0.333 | |
segmentDensity | 0.666 | 0.016 | 0.683 | |
unmatched | 0.216 | 0.016 | 0.228 | |
withReplacement | 0.159 | 0.012 | 0.167 | |