| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:37 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the nullranges package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1381/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nullranges 1.7.4 (landing page) Michael Love
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
| Package: nullranges |
| Version: 1.7.4 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings nullranges_1.7.4.tar.gz |
| StartedAt: 2023-06-06 03:20:34 -0000 (Tue, 06 Jun 2023) |
| EndedAt: 2023-06-06 03:32:04 -0000 (Tue, 06 Jun 2023) |
| EllapsedTime: 690.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: nullranges.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings nullranges_1.7.4.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/nullranges.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘nullranges/DESCRIPTION’ ... OK
* this is package ‘nullranges’ version ‘1.7.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nullranges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotCovariate 4.966 0.331 6.119
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘bootRanges.Rmd’ using ‘UTF-8’... OK
‘matchRanges.Rmd’ using ‘UTF-8’... OK
‘matching_ginteractions.Rmd’ using ‘UTF-8’... OK
‘matching_granges.Rmd’ using ‘UTF-8’... OK
‘matching_pool_set.Rmd’ using ‘UTF-8’... OK
‘nullranges.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
nullranges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL nullranges ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘nullranges’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullranges)
nullranges.Rcheck/tests/testthat.Rout
R version 4.3.0 (2023-04-21) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(nullranges)
>
> test_check("nullranges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
>
> proc.time()
user system elapsed
22.526 1.084 25.619
nullranges.Rcheck/nullranges-Ex.timings
| name | user | system | elapsed | |
| MatchedDataFrame | 3.324 | 0.168 | 3.484 | |
| MatchedGInteractions | 0.709 | 0.055 | 0.825 | |
| MatchedGRanges | 0.614 | 0.040 | 0.646 | |
| bootRanges | 0.418 | 0.004 | 0.423 | |
| combnCov | 0.004 | 0.000 | 0.005 | |
| covariates | 0.214 | 0.008 | 0.222 | |
| focal | 0.206 | 0.012 | 0.219 | |
| indices | 1.259 | 0.144 | 1.406 | |
| makeExampleMatchedDataSet | 0.850 | 0.036 | 1.038 | |
| matchRanges | 1.848 | 0.048 | 1.992 | |
| matched | 0.207 | 0.004 | 0.214 | |
| matchedClass | 0.207 | 0.012 | 0.219 | |
| matchedData | 0.196 | 0.008 | 0.205 | |
| method | 0.190 | 0.000 | 0.191 | |
| oneRegionSegment | 0.506 | 0.027 | 1.195 | |
| overview | 0.235 | 0.012 | 0.435 | |
| plotCovariate | 4.966 | 0.331 | 6.119 | |
| plotPropensity | 1.844 | 0.112 | 1.957 | |
| plotSegment | 2.046 | 0.164 | 2.218 | |
| pool | 0.188 | 0.004 | 0.188 | |
| reduceSegment | 0.325 | 0.008 | 0.333 | |
| segmentDensity | 0.666 | 0.016 | 0.683 | |
| unmatched | 0.216 | 0.016 | 0.228 | |
| withReplacement | 0.159 | 0.012 | 0.167 | |