| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:36 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the mogsa package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mogsa.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1255/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mogsa 1.35.0 (landing page) Chen Meng
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
| Package: mogsa |
| Version: 1.35.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:mogsa.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings mogsa_1.35.0.tar.gz |
| StartedAt: 2023-06-06 02:27:44 -0000 (Tue, 06 Jun 2023) |
| EndedAt: 2023-06-06 02:32:57 -0000 (Tue, 06 Jun 2023) |
| EllapsedTime: 312.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: mogsa.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:mogsa.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings mogsa_1.35.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/mogsa.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘mogsa/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mogsa’ version ‘1.35.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mogsa’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) NCI60_4array_supdata.Rd:15: Escaped LaTeX specials: \$
checkRd: (-1) NCI60_4array_supdata.Rd:19: Escaped LaTeX specials: \$
checkRd: (-1) NCI60_4array_supdata.Rd:23: Escaped LaTeX specials: \$
checkRd: (-1) NCI60_4array_supdata.Rd:27: Escaped LaTeX specials: \$
checkRd: (-1) NCI60_4arrays.Rd:21: Escaped LaTeX specials: \$
checkRd: (-1) NCI60_4arrays.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) NCI60_4arrays.Rd:29: Escaped LaTeX specials: \$
checkRd: (-1) NCI60_4arrays.Rd:33: Escaped LaTeX specials: \$
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘moCluster-knitr.Rnw’... OK
‘mogsa-knitr.Rnw’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.18-bioc/meat/mogsa.Rcheck/00check.log’
for details.
mogsa.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL mogsa ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘mogsa’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mogsa)
mogsa.Rcheck/mogsa-Ex.timings
| name | user | system | elapsed | |
| GIS | 0.857 | 0.000 | 0.860 | |
| annotate.gs | 0.191 | 0.004 | 0.196 | |
| bootMbpca | 0 | 0 | 0 | |
| bootMoa | 0.001 | 0.000 | 0.000 | |
| box.gs.feature | 0.303 | 0.000 | 0.304 | |
| combine-methods | 0.353 | 0.000 | 0.354 | |
| decompose.gs.group | 0.213 | 0.004 | 0.217 | |
| decompose.gs.ind | 0.196 | 0.000 | 0.196 | |
| distMoa | 0.315 | 0.000 | 0.317 | |
| getmgsa | 0.195 | 0.000 | 0.196 | |
| matpower | 0.001 | 0.000 | 0.001 | |
| mbpca | 4.265 | 0.068 | 4.341 | |
| mgsa-class | 0.342 | 0.000 | 0.343 | |
| moGap | 2.289 | 0.044 | 2.337 | |
| moa-class | 0.136 | 0.000 | 0.137 | |
| moa | 1.047 | 0.008 | 1.056 | |
| moa.sup-class | 0.170 | 0.004 | 0.174 | |
| moaCoef | 0.354 | 0.004 | 0.359 | |
| moaScore | 0.346 | 0.016 | 0.362 | |
| mogsa-package | 0.400 | 0.000 | 0.401 | |
| mogsa | 0.567 | 0.004 | 0.573 | |
| pairwise.rv | 0.014 | 0.000 | 0.013 | |
| plotGS | 0.199 | 0.000 | 0.199 | |
| prepGraphite | 0.323 | 0.000 | 0.325 | |
| prepMsigDB | 0.002 | 0.000 | 0.003 | |
| prepSupMoa | 4.828 | 0.135 | 4.973 | |
| softK | 0.001 | 0.000 | 0.000 | |
| sup.moa | 0.455 | 0.004 | 0.460 | |
| wsvd | 0.038 | 0.000 | 0.039 | |