| Back to Build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-06-06 11:00:35 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the made4 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/made4.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1087/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| made4 1.75.0 (landing page) Aedin Culhane
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
| Package: made4 |
| Version: 1.75.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:made4.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings made4_1.75.0.tar.gz |
| StartedAt: 2023-06-06 01:08:10 -0000 (Tue, 06 Jun 2023) |
| EndedAt: 2023-06-06 01:11:50 -0000 (Tue, 06 Jun 2023) |
| EllapsedTime: 219.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: made4.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:made4.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings made4_1.75.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/made4.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘made4/DESCRIPTION’ ... OK
* this is package ‘made4’ version ‘1.75.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘made4’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) NCI60.Rd:19: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:22: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:30: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:31: Escaped LaTeX specials: \$ \$
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checkRd: (-1) NCI60.Rd:50: Escaped LaTeX specials: \$
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checkRd: (-1) NCI60.Rd:60: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:64: Escaped LaTeX specials: \$ \$
prepare_Rd: asDataFrame.Rd:30: Dropping empty section \examples
checkRd: (-1) between.graph.Rd:17: Escaped LaTeX specials: \$ \$
checkRd: (-1) between.graph.Rd:25: Escaped LaTeX specials: \$
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checkRd: (-1) between.graph.Rd:34: Escaped LaTeX specials: \$
checkRd: (-1) bga.Rd:27: Escaped LaTeX specials: \$ \$ \$
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checkRd: (-1) do3d.Rd:22: Escaped LaTeX specials: \$ \$
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checkRd: (-1) genes1d.Rd:9: Escaped LaTeX specials: \$ \$
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checkRd: (-1) jmol3D.Rd:14: Escaped LaTeX specials: \$ \$
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checkRd: (-1) khan.Rd:15: Escaped LaTeX specials: \$
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checkRd: (-1) khan.Rd:35: Escaped LaTeX specials: \$
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checkRd: (-1) ord.Rd:27: Escaped LaTeX specials: \$ \$
checkRd: (-1) ord.Rd:53: Escaped LaTeX specials: \$
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checkRd: (-1) plotarrays.Rd:6: Escaped LaTeX specials: \$
checkRd: (-1) plotgenes.Rd:6: Escaped LaTeX specials: \$
checkRd: (-1) s.var.Rd:35: Escaped LaTeX specials: \$ \$ \$
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checkRd: (-1) sumstats.Rd:16: Escaped LaTeX specials: \$ \$
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* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘introduction.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.18-bioc/meat/made4.Rcheck/00check.log’
for details.
made4.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL made4 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘made4’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (made4)
made4.Rcheck/made4-Ex.timings
| name | user | system | elapsed | |
| NCI60 | 0.007 | 0.000 | 0.007 | |
| bet.coinertia | 0.011 | 0.000 | 0.011 | |
| between.graph | 0.323 | 0.034 | 0.358 | |
| bga | 0.392 | 0.016 | 0.408 | |
| bga.jackknife | 1.878 | 0.036 | 1.917 | |
| bga.suppl | 0.480 | 0.016 | 0.496 | |
| cia | 0.210 | 0.004 | 0.214 | |
| commonMap | 0.031 | 0.000 | 0.031 | |
| comparelists | 0.001 | 0.000 | 0.001 | |
| do3d | 0.439 | 0.000 | 0.440 | |
| genes1d | 0.111 | 0.004 | 0.115 | |
| getcol | 0.024 | 0.000 | 0.024 | |
| graph1D | 0.089 | 0.004 | 0.093 | |
| heatplot | 3.150 | 0.132 | 3.290 | |
| html3D | 0.289 | 0.004 | 0.293 | |
| isDataFrame | 0.026 | 0.000 | 0.027 | |
| khan | 0.007 | 0.000 | 0.007 | |
| ord | 0.252 | 0.000 | 0.253 | |
| overview | 0.607 | 0.004 | 0.613 | |
| plotarrays | 0.327 | 0.008 | 0.335 | |
| plotgenes | 0.146 | 0.000 | 0.146 | |
| prettyDend | 0.743 | 0.080 | 0.824 | |
| randomiser | 0.001 | 0.003 | 0.004 | |
| s.var | 0.356 | 0.116 | 0.473 | |
| sumstats | 0.295 | 0.036 | 0.331 | |
| suppl | 0.555 | 0.064 | 0.620 | |
| topgenes | 0.090 | 0.016 | 0.107 | |