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This page was generated on 2023-06-06 11:00:35 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for maSigPro on kunpeng2


To the developers/maintainers of the maSigPro package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1108/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.73.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: devel
git_last_commit: 12c2da1
git_last_commit_date: 2023-04-25 13:42:37 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: maSigPro
Version: 1.73.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings maSigPro_1.73.0.tar.gz
StartedAt: 2023-06-06 01:15:55 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 01:19:04 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 189.3 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings maSigPro_1.73.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/maSigPro.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.73.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
getDS         15.925  0.028  15.988
IsoModel      15.657  0.000  15.690
getDSPatterns 15.573  0.008  15.614
tableDS       15.533  0.000  15.565
seeDS         15.294  0.004  15.332
ISOdesign     15.222  0.000  15.253
ISOdata       15.051  0.060  15.139
PodiumChange  15.084  0.000  15.115
IsoPlot       14.852  0.000  14.883
T.fit          6.958  0.004   6.975
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘maSigPro.Rnw’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL maSigPro
###
##############################################################################
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* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata15.051 0.06015.139
ISOdesign15.222 0.00015.253
IsoModel15.657 0.00015.690
IsoPlot14.852 0.00014.883
NBdata0.0010.0000.001
NBdesign0.0010.0000.001
PlotGroups0.0350.0000.035
PlotProfiles0.0050.0000.005
PodiumChange15.084 0.00015.115
T.fit6.9580.0046.975
average.rows0.0030.0000.003
data.abiotic0.0030.0000.004
edesign.abiotic0.0020.0000.002
edesignCT0.0010.0000.001
edesignDR0.0010.0000.001
get.siggenes3.3140.0003.321
getDS15.925 0.02815.988
getDSPatterns15.573 0.00815.614
i.rank000
maSigProUsersGuide0.0030.0000.004
make.design.matrix0.0030.0040.007
p.vector2.2550.0102.271
position0.0000.0000.001
reg.coeffs000
see.genes1.2920.0081.302
seeDS15.294 0.00415.332
stepback0.0350.0000.036
stepfor0.1270.0000.127
suma2Venn0.0200.0000.023
tableDS15.533 0.00015.565
two.ways.stepback0.1090.0000.109
two.ways.stepfor0.1350.0030.138