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This page was generated on 2023-06-06 11:00:34 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for lpsymphony on kunpeng2


To the developers/maintainers of the lpsymphony package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/lpsymphony.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1073/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lpsymphony 1.29.0  (landing page)
Vladislav Kim
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/lpsymphony
git_branch: devel
git_last_commit: 2156ad8
git_last_commit_date: 2023-04-25 14:43:16 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    ERROR  skipped

Summary

Package: lpsymphony
Version: 1.29.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL lpsymphony
StartedAt: 2023-06-05 08:16:35 -0000 (Mon, 05 Jun 2023)
EndedAt: 2023-06-05 08:16:50 -0000 (Mon, 05 Jun 2023)
EllapsedTime: 15.1 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL lpsymphony
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘lpsymphony’ ...
** using staged installation
configure: loading site script /home/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... ./config.guess: unable to guess system type

This script, last modified 2007-05-17, has failed to recognize
the operating system you are using. It is advised that you
download the most up to date version of the config scripts from

  http://savannah.gnu.org/cgi-bin/viewcvs/*checkout*/config/config/config.guess
and
  http://savannah.gnu.org/cgi-bin/viewcvs/*checkout*/config/config/config.sub

If the version you run (./config.guess) is already up to date, please
send the following data and any information you think might be
pertinent to <config-patches@gnu.org> in order to provide the needed
information to handle your system.

config.guess timestamp = 2007-05-17

uname -m = aarch64
uname -r = 5.10.0-136.31.0.107.oe2203sp1.aarch64
uname -s = Linux
uname -v = #1 SMP Thu May 11 10:47:00 CST 2023

/usr/bin/uname -p = aarch64
/bin/uname -X     = 

hostinfo               = 
/bin/universe          = 
/usr/bin/arch -k       = 
/bin/arch              = aarch64
/usr/bin/oslevel       = 
/usr/convex/getsysinfo = 

UNAME_MACHINE = aarch64
UNAME_RELEASE = 5.10.0-136.31.0.107.oe2203sp1.aarch64
UNAME_SYSTEM  = Linux
UNAME_VERSION = #1 SMP Thu May 11 10:47:00 CST 2023
configure: error: cannot guess build type; you must specify one
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY'
make[1]: *** No targets specified and no makefile found.  Stop.
make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/lpsymphony/src/SYMPHONY'
make: *** [Makevars:13: SYMPHONY.ts] Error 2
ERROR: compilation failed for package ‘lpsymphony’
* removing ‘/home/biocbuild/R/R-4.3.0/site-library/lpsymphony’