Build/check report for BioC 3.18 - CHECK results for graper on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.3.0 (2023-04-21) -- "Already Tomorrow"	4366
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.17.1

Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings graper_1.17.1.tar.gz

StartedAt: 2023-06-05 23:39:20 -0000 (Mon, 05 Jun 2023)

EndedAt: 2023-06-05 23:41:13 -0000 (Mon, 05 Jun 2023)

EllapsedTime: 113.1 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings graper_1.17.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/graper.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.17.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (GCC) 10.3.1’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... NOTE
  installed size is  7.7Mb
  sub-directories of 1Mb or more:
    libs   7.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘example_linear.Rmd’ using ‘UTF-8’... OK
  ‘example_logistic.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/graper.Rcheck/00check.log’
for details.

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.3.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.3.0/library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c fit_graper.cpp -o fit_graper.o
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -lblas -lgfortran -lm -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R version 4.3.0 (2023-04-21) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-900.099
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-575.976
ELB improved by 324.123

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-515.75
ELB improved by 60.2258

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.1
ELB improved by 30.6498

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.559
ELB improved by 12.5415

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.632
ELB improved by 6.92664

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.846
ELB improved by 5.78586

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.79
ELB improved by 6.0558

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.248
ELB improved by 6.54248

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.027
ELB improved by 6.22103

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.295
ELB improved by 4.73134

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.388
ELB improved by 2.90758

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.753
ELB improved by 1.63466

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.781
ELB improved by 0.971874

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.133
ELB improved by 0.648188

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.655
ELB improved by 0.477797

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.278
ELB improved by 0.377287

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.967
ELB improved by 0.310674

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.706
ELB improved by 0.261594

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.483
ELB improved by 0.222933

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.291
ELB improved by 0.191962

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.124
ELB improved by 0.167307

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.976
ELB improved by 0.147634

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.844
ELB improved by 0.131608

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.726
ELB improved by 0.118161

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.62
ELB improved by 0.106583

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.523
ELB improved by 0.0964678

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.436
ELB improved by 0.087611

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.356
ELB improved by 0.0798996

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.282
ELB improved by 0.0732392

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.215
ELB improved by 0.0675176

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.152
ELB improved by 0.0626038

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.094
ELB improved by 0.0583623

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.039
ELB improved by 0.0546679

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.988
ELB improved by 0.0514151

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.939
ELB improved by 0.0485189

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.893
ELB improved by 0.0459135

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.85
ELB improved by 0.0435478

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.808
ELB improved by 0.0413825

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.769
ELB improved by 0.0393867

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.732
ELB improved by 0.037536

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.696
ELB improved by 0.0358109

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.662
ELB improved by 0.0341954

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.629
ELB improved by 0.0326767

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.598
ELB improved by 0.031244

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.568
ELB improved by 0.0298887

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.539
ELB improved by 0.0286035

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.512
ELB improved by 0.0273824

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.486
ELB improved by 0.0262205

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.46
ELB improved by 0.0251136

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.436
ELB improved by 0.0240582

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.413
ELB improved by 0.0230515

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.391
ELB improved by 0.0220908

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.37
ELB improved by 0.0211739

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.35
ELB improved by 0.0202989

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.33
ELB improved by 0.019464

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.312
ELB improved by 0.0186675

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.294
ELB improved by 0.017908

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.277
ELB improved by 0.0171839

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.26
ELB improved by 0.0164938

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.244
ELB improved by 0.0158365

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.229
ELB improved by 0.0152105

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.214
ELB improved by 0.0146146

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.2
ELB improved by 0.0140474

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.187
ELB improved by 0.0135078

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.174
ELB improved by 0.0129946

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.161
ELB improved by 0.0125064

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.149
ELB improved by 0.0120422

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.138
ELB improved by 0.0116007

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.126
ELB improved by 0.011181

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.116
ELB improved by 0.0107818

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.105
ELB improved by 0.0104023

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.095
ELB improved by 0.0100413

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.086
ELB improved by 0.00969801

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-834.91
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-600.488
ELB improved by 234.422

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-541.783
ELB improved by 58.7048

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.398
ELB improved by 56.3849

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.846
ELB improved by 36.552

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.827
ELB improved by 15.0191

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.07
ELB improved by 6.75684

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.604
ELB improved by 4.46554

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.903
ELB improved by 3.70151

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.396
ELB improved by 3.50707

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.832
ELB improved by 3.56351

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.1
ELB improved by 3.73216

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.168
ELB improved by 3.9318

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.102
ELB improved by 4.06619

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.118
ELB improved by 3.98376

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.597
ELB improved by 3.52149

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.891
ELB improved by 2.7061

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.07
ELB improved by 1.82083

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.929
ELB improved by 1.14103

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.212
ELB improved by 0.71719

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.738
ELB improved by 0.474246

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.402
ELB improved by 0.335412

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.15
ELB improved by 0.252326

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.951
ELB improved by 0.199027

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.788
ELB improved by 0.162375

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.653
ELB improved by 0.13575

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.537
ELB improved by 0.115687

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.437
ELB improved by 0.100237

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.349
ELB improved by 0.088186

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.27
ELB improved by 0.078714

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.199
ELB improved by 0.0712336

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.133
ELB improved by 0.0653153

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.073
ELB improved by 0.0606416

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.016
ELB improved by 0.0569773

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.962
ELB improved by 0.0541466

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.91
ELB improved by 0.0520173

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.859
ELB improved by 0.0504884

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.81
ELB improved by 0.049482

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.761
ELB improved by 0.0489373

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.712
ELB improved by 0.0488058

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.663
ELB improved by 0.0490486

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.613
ELB improved by 0.0496337

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.563
ELB improved by 0.0505339

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.511
ELB improved by 0.0517257

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.458
ELB improved by 0.0531876

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.403
ELB improved by 0.0548994

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.346
ELB improved by 0.0568414

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.287
ELB improved by 0.0589938

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.226
ELB improved by 0.0613364

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.162
ELB improved by 0.0638485

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.095
ELB improved by 0.0665092

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.026
ELB improved by 0.0692971

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.954
ELB improved by 0.0721913

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.879
ELB improved by 0.0751711

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.8
ELB improved by 0.0782165

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.719
ELB improved by 0.0813076

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.635
ELB improved by 0.0844246

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.547
ELB improved by 0.0875466

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.456
ELB improved by 0.09065

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.363
ELB improved by 0.093708

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.266
ELB improved by 0.0966882

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.167
ELB improved by 0.0995525

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.064
ELB improved by 0.102256

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.96
ELB improved by 0.104747

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.853
ELB improved by 0.106969

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.744
ELB improved by 0.108863

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.633
ELB improved by 0.110368

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.522
ELB improved by 0.111426

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.41
ELB improved by 0.111984

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.298
ELB improved by 0.112001

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.186
ELB improved by 0.111442

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.076
ELB improved by 0.11029

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.968
ELB improved by 0.108534

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.861
ELB improved by 0.106175

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.758
ELB improved by 0.103216

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.659
ELB improved by 0.0996646

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.563
ELB improved by 0.095528

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.472
ELB improved by 0.0908219

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.387
ELB improved by 0.0855784

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.307
ELB improved by 0.0798577

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.233
ELB improved by 0.0737561

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.166
ELB improved by 0.0674055

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.105
ELB improved by 0.0609626

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.05
ELB improved by 0.0545917

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.002
ELB improved by 0.0484451

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.959
ELB improved by 0.0426476

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.922
ELB improved by 0.0372891

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.889
ELB improved by 0.0324227

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.861
ELB improved by 0.0280692

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.837
ELB improved by 0.0242231

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.816
ELB improved by 0.0208605

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.798
ELB improved by 0.0179448

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.783
ELB improved by 0.0154333

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.769
ELB improved by 0.013281

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.758
ELB improved by 0.0114433

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.748
ELB improved by 0.00987852

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-898.11
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-567.882
ELB improved by 330.228

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-509.75
ELB improved by 58.1315

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.629
ELB improved by 32.1214

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.378
ELB improved by 13.2507

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.941
ELB improved by 6.43724

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.63
ELB improved by 4.31111

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.907
ELB improved by 3.72253

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.285
ELB improved by 3.6217

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.655
ELB improved by 3.62995

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.062
ELB improved by 3.59363

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.631
ELB improved by 3.43124

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.522
ELB improved by 3.10814

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.887
ELB improved by 2.63496

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.811
ELB improved by 2.07653

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.271
ELB improved by 1.53959

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.168
ELB improved by 1.10301

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.385
ELB improved by 0.7831

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.821
ELB improved by 0.563912

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.399
ELB improved by 0.422193

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.066
ELB improved by 0.333351

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.789
ELB improved by 0.276965

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.549
ELB improved by 0.239652

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.335
ELB improved by 0.2138

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.14
ELB improved by 0.19529

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.958
ELB improved by 0.181866

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.786
ELB improved by 0.172234

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.62
ELB improved by 0.165616

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.459
ELB improved by 0.161522

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.299
ELB improved by 0.159636

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.139
ELB improved by 0.159763

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.978
ELB improved by 0.161795

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.812
ELB improved by 0.16569

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.64
ELB improved by 0.171472

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.461
ELB improved by 0.179224

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.272
ELB improved by 0.189094

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.071
ELB improved by 0.201309

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.855
ELB improved by 0.216196

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.62
ELB improved by 0.234223

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.364
ELB improved by 0.256074

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.082
ELB improved by 0.282765

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.766
ELB improved by 0.31583

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.408
ELB improved by 0.357539

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.997
ELB improved by 0.410736

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.521
ELB improved by 0.476751

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.972
ELB improved by 0.548813

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.365
ELB improved by 0.606728

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.733
ELB improved by 0.632339

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.104
ELB improved by 0.629156

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.494
ELB improved by 0.609854

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.91
ELB improved by 0.584029

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.348
ELB improved by 0.562199

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.79
ELB improved by 0.5576

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.216
ELB improved by 0.573725

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.641
ELB improved by 0.575459

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.128
ELB improved by 0.512806

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.722
ELB improved by 0.406155

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.415
ELB improved by 0.306392

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.183
ELB improved by 0.232011

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.001
ELB improved by 0.182797

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.844
ELB improved by 0.15685

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.687
ELB improved by 0.156345

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.499
ELB improved by 0.18877

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.241
ELB improved by 0.257603

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.899
ELB improved by 0.34252

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.48
ELB improved by 0.41896

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.01
ELB improved by 0.469705

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.552
ELB improved by 0.458285

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.155
ELB improved by 0.39647

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.839
ELB improved by 0.316186

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.608
ELB improved by 0.230867

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.452
ELB improved by 0.155576

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.352
ELB improved by 0.100281

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.288
ELB improved by 0.064587

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.245
ELB improved by 0.0430583

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.214
ELB improved by 0.0302811

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.192
ELB improved by 0.0225482

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.174
ELB improved by 0.0176851

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.16
ELB improved by 0.0144872

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.147
ELB improved by 0.0122883

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.137
ELB improved by 0.0107101

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.127
ELB improved by 0.00953041

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-849.006
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-568.474
ELB improved by 280.533

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-507.433
ELB improved by 61.0407

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.016
ELB improved by 40.4174

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.932
ELB improved by 18.0834

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.133
ELB improved by 6.79909

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.921
ELB improved by 3.21169

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.812
ELB improved by 2.10923

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.145
ELB improved by 1.66766

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.668
ELB improved by 1.47684

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.264
ELB improved by 1.40361

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.875
ELB improved by 1.38909

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.469
ELB improved by 1.40622

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.029
ELB improved by 1.44026

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.549
ELB improved by 1.47939

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.038
ELB improved by 1.51113

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.517
ELB improved by 1.52076

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.029
ELB improved by 1.48816

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.642
ELB improved by 1.38723

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.44
ELB improved by 1.20196

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.487
ELB improved by 0.952509

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.795
ELB improved by 0.692032

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.324
ELB improved by 0.471226

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.013
ELB improved by 0.311568

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.805
ELB improved by 0.207806

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.661
ELB improved by 0.144121

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.555
ELB improved by 0.105676

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.473
ELB improved by 0.0821647

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.405
ELB improved by 0.0673195

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.348
ELB improved by 0.0575365

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.297
ELB improved by 0.0507777

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.251
ELB improved by 0.0458842

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.209
ELB improved by 0.0421844

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.17
ELB improved by 0.0392796

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.133
ELB improved by 0.0369258

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.098
ELB improved by 0.0349684

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.065
ELB improved by 0.0333066

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.033
ELB improved by 0.0318721

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.002
ELB improved by 0.030617

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.973
ELB improved by 0.0295069

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.944
ELB improved by 0.028516

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.916
ELB improved by 0.0276247

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.89
ELB improved by 0.0268174

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.864
ELB improved by 0.0260815

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.838
ELB improved by 0.0254067

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.813
ELB improved by 0.0247839

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.789
ELB improved by 0.0242054

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.766
ELB improved by 0.0236645

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.742
ELB improved by 0.0231549

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.72
ELB improved by 0.0226711

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.697
ELB improved by 0.0222078

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.676
ELB improved by 0.0217604

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.654
ELB improved by 0.0213242

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.634
ELB improved by 0.0208954

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.613
ELB improved by 0.0204702

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.593
ELB improved by 0.0200454

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.573
ELB improved by 0.0196181

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.554
ELB improved by 0.0191861

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.535
ELB improved by 0.0187476

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.517
ELB improved by 0.0183015

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.499
ELB improved by 0.0178469

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.482
ELB improved by 0.017384

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.465
ELB improved by 0.0169132

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.449
ELB improved by 0.0164352

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.433
ELB improved by 0.0159515

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.417
ELB improved by 0.0154637

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.402
ELB improved by 0.0149736

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.388
ELB improved by 0.0144832

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.374
ELB improved by 0.0139945

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.36
ELB improved by 0.0135098

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.347
ELB improved by 0.0130308

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.335
ELB improved by 0.0125596

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.322
ELB improved by 0.0120977

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.311
ELB improved by 0.0116469

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.3
ELB improved by 0.0112083

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.289
ELB improved by 0.0107831

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.278
ELB improved by 0.0103722

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.269
ELB improved by 0.00997617

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.817   0.107   2.918

name	user	system	elapsed
coef.graper	0.083	0.008	0.091
getPIPs	0.075	0.010	0.086
graper	0.143	0.004	0.147
makeExampleData	0.013	0.000	0.013
makeExampleDataWithUnequalGroups	0.015	0.000	0.015
plotELBO	0.294	0.008	0.303
plotGroupPenalties	1.159	0.016	1.177
plotPosterior	0.759	0.012	0.773
predict.graper	3.151	0.020	3.176
print.graper	0.077	0.012	0.089

CHECK results for graper on kunpeng2

Summary

Command output

Installation output

Tests output

Example timings