| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:32 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the geva package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/geva.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 818/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| geva 1.9.0 (landing page) Itamar José Guimarães Nunes
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: geva |
| Version: 1.9.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data geva |
| StartedAt: 2023-06-05 11:48:50 -0000 (Mon, 05 Jun 2023) |
| EndedAt: 2023-06-05 11:51:15 -0000 (Mon, 05 Jun 2023) |
| EllapsedTime: 145.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data geva
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* checking for file ‘geva/DESCRIPTION’ ... OK
* preparing ‘geva’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘geva.Rmd’ using rmarkdown
Warning in Sys.setlocale("LC_TIME", "English_United States") :
OS reports request to set locale to "English_United States" cannot be honored
Warning in system2(..., stdout = if (use_file_stdout()) f1 else FALSE, stderr = f2) :
error in running command
sh: line 1: biber: command not found
Warning in system2(...) : error in running command
Warning: LaTeX Warning: Citation 'smyth2005limma' on page 2 undefined on input line 165.
Warning: LaTeX Warning: Citation 'love2014moderated' on page 2 undefined on input line 1
Warning: 66.
Warning: LaTeX Warning: Citation 'nunes2018gene' on page 2 undefined on input line 169.
Warning: LaTeX Warning: Citation 'kallio2011chipster' on page 2 undefined on input line
Warning: 170.
Warning: Package longtable Warning: Column widths have changed
Warning: (longtable) in table 1 on input line 903.
Warning: Package longtable Warning: Column widths have changed
Warning: (longtable) in table 2 on input line 942.
Warning: LaTeX Warning: Empty bibliography on input line 993.
Warning: Package longtable Warning: Table widths have changed. Rerun LaTeX.
Warning: LaTeX Warning: There were undefined references.
Warning: LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
Warning: Package biblatex Warning: Please (re)run Biber on the file:
Warning: (biblatex) geva
Warning: (biblatex) and rerun LaTeX afterwards.
Error: processing vignette 'geva.Rmd' failed with diagnostics:
Failed to build the bibliography via biber
--- failed re-building ‘geva.Rmd’
SUMMARY: processing the following file failed:
‘geva.Rmd’
Error: Vignette re-building failed.
Execution halted