Back to Build/check report for BioC 3.18:   simplified   long
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-06-06 11:00:31 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for flowPeaks on kunpeng2


To the developers/maintainers of the flowPeaks package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 715/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.47.0  (landing page)
Yongchao Ge
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/flowPeaks
git_branch: devel
git_last_commit: 7e072bb
git_last_commit_date: 2023-04-25 14:23:16 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

Summary

Package: flowPeaks
Version: 1.47.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL flowPeaks
StartedAt: 2023-06-05 08:09:09 -0000 (Mon, 05 Jun 2023)
EndedAt: 2023-06-05 08:09:36 -0000 (Mon, 05 Jun 2023)
EllapsedTime: 27.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL flowPeaks
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘flowPeaks’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -c Rpack.cpp -o Rpack.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -c Rregistrate.cpp -o Rregistrate.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -c flowPeaks.cpp -o flowPeaks.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -c func_collect.cpp -o func_collect.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -c func_collect_supp.cpp -o func_collect_supp.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -c kd_tree.cpp -o kd_tree.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG   -I/usr/local/include   `gsl-config --cflags`  -fPIC  -g -O2  -c kmns.cpp -o kmns.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -lm -L/home/biocbuild/R/R-4.3.0/lib -lR
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-flowPeaks/00new/flowPeaks/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowPeaks)