| Back to Build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-06-06 11:00:31 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the flowCore package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowCore.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 704/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowCore 2.13.0 (landing page) Mike Jiang
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | |||||||||
| Package: flowCore |
| Version: 2.13.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:flowCore.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings flowCore_2.13.0.tar.gz |
| StartedAt: 2023-06-05 22:29:50 -0000 (Mon, 05 Jun 2023) |
| EndedAt: 2023-06-05 22:33:26 -0000 (Mon, 05 Jun 2023) |
| EllapsedTime: 216.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: flowCore.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:flowCore.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings flowCore_2.13.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/flowCore.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘flowCore/DESCRIPTION’ ... OK
* this is package ‘flowCore’ version ‘2.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowCore’ can be installed ... OK
* used C++ compiler: ‘g++ (GCC) 10.3.1’
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... NOTE
installed size is 18.2Mb
sub-directories of 1Mb or more:
R 1.1Mb
data 5.4Mb
extdata 1.1Mb
libs 9.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
eval,compensatedParameter-missing : <anonymous>: no visible binding for
global variable ‘mat’
eval,compensatedParameter-missing : <anonymous>: no visible binding for
global variable ‘msv’
show,flowFrame: no visible global function definition for
‘capture.output’
Undefined global functions or variables:
capture.output mat msv
Consider adding
importFrom("utils", "capture.output")
to your NAMESPACE file.
* checking Rd files ... NOTE
checkRd: (-1) identifier-methods.Rd:36: Escaped LaTeX specials: \^
checkRd: (-1) quadraticTransform.Rd:26: Escaped LaTeX specials: \^
checkRd: (-1) read.FCS.Rd:26: Escaped LaTeX specials: \$
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... WARNING
Note: information on .o files is not available
File ‘/home/biocbuild/R/R-4.3.0/site-library/flowCore/libs/flowCore.so’:
Found ‘_ZSt4cerr’, possibly from ‘std::cerr’ (C++)
Found ‘rand’, possibly from ‘rand’ (C)
Found ‘sprintf’, possibly from ‘sprintf’ (C)
Found ‘srand’, possibly from ‘srand’ (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
filterResultList-class 6.481 0.179 6.694
flowFrame-class 5.242 0.085 5.366
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HowTo-flowCore.Rnw’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 4 NOTEs
See
‘/home/biocbuild/bbs-3.18-bioc/meat/flowCore.Rcheck/00check.log’
for details.
flowCore.Rcheck/00install.out
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### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL flowCore
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘flowCore’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c FastLogicle.cpp -o FastLogicle.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c Hyperlog.cpp -o Hyperlog.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c Logicle.cpp -o Logicle.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c biexponential.cpp -o biexponential.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c convertRawBytes.cpp -o convertRawBytes.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c cpp11.cpp -o cpp11.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c fcsTextParse.cpp -o fcsTextParse.o
In file included from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/mem_fn.hpp:22,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/function/detail/prologue.hpp:18,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/function.hpp:30,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/algorithm/string/split.hpp:16,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/algorithm/string.hpp:23,
from fcsTextParse.cpp:9:
/home/biocbuild/R/R-4.3.0/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/bits/locale_conv.h:41,
from /usr/include/c++/10.3.1/locale:43,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/algorithm/string/classification.hpp:15,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/algorithm/string/trim.hpp:23,
from /home/biocbuild/R/R-4.3.0/library/BH/include/boost/algorithm/string.hpp:19,
from fcsTextParse.cpp:9:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c hyperlogTransform.cpp -o hyperlogTransform.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c inPolygon.cpp -o inPolygon.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c inPolytope.cpp -o inPolytope.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c logicleTransform.cpp -o logicleTransform.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c poly_centroid.cpp -o poly_centroid.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c sortBytes.cpp -o sortBytes.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c uint2double.cpp -o uint2double.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/library/cpp11/include' -I'/home/biocbuild/R/R-4.3.0/library/BH/include' -I'/home/biocbuild/R/R-4.3.0/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.0/site-library/RProtoBufLib/include' -I/usr/local/include -fPIC -g -O2 -c zeroin.cpp -o zeroin.o
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o biexponential.o convertRawBytes.o cpp11.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o logicleTransform.o poly_centroid.o sortBytes.o uint2double.o zeroin.o /home/biocbuild/R/R-4.3.0/site-library/cytolib/lib/libcytolib.a -L/home/biocbuild/R/R-4.3.0/lib -lR
if [ `uname -s` = 'Darwin' ]; then install_name_tool -change /usr/local/clang4/lib/libc++.1.dylib /usr/lib/libc++.1.dylib flowCore.so; fi
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-flowCore/00new/flowCore/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowCore)
flowCore.Rcheck/tests/testthat.Rout
R version 4.3.0 (2023-04-21) -- "Already Tomorrow"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(flowCore)
> library(flowStats)
Warning message:
replacing previous import 'flowViz::contour' by 'graphics::contour' when loading 'flowStats'
>
>
> test_check("flowCore")
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following object is masked from 'package:flowStats':
normalize
The following object is masked from 'package:flowCore':
normalize
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
[ FAIL 0 | WARN 2 | SKIP 3 | PASS 334 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• dir.exists(dataPath) is not TRUE (1)
• file.exists(filename) is not TRUE (2)
[ FAIL 0 | WARN 2 | SKIP 3 | PASS 334 ]
>
> #devtools::test("~/rglab/workspace/flowCore")
>
> proc.time()
user system elapsed
28.305 0.789 29.134
flowCore.Rcheck/flowCore-Ex.timings
| name | user | system | elapsed | |
| EHtrans-class | 0.066 | 0.004 | 0.072 | |
| FCSTransTransform | 1.335 | 0.051 | 1.391 | |
| Subset-methods | 0.295 | 0.012 | 0.311 | |
| arcsinhTransform | 0.076 | 0.000 | 0.076 | |
| asinht-class | 0.036 | 0.000 | 0.036 | |
| asinhtGml2-class | 0.045 | 0.000 | 0.045 | |
| biexponentialTransform | 3.885 | 0.048 | 3.940 | |
| boundaryFilter-class | 0.106 | 0.000 | 0.106 | |
| characterOrNumeric-class | 0.001 | 0.000 | 0.001 | |
| characterOrParameters-class | 0 | 0 | 0 | |
| characterOrTransformation-class | 0.000 | 0.001 | 0.001 | |
| coerce | 0.070 | 0.002 | 0.072 | |
| collapse_desc | 1.616 | 0.012 | 1.634 | |
| compensatedParameter-class | 0.175 | 0.004 | 0.186 | |
| compensation-class | 0.397 | 0.021 | 0.425 | |
| decompensate | 0.069 | 0.000 | 0.070 | |
| dg1polynomial-class | 0.037 | 0.000 | 0.038 | |
| each_col | 0.039 | 0.008 | 0.050 | |
| ellipsoidGate-class | 0.081 | 0.000 | 0.081 | |
| exponential-class | 0.035 | 0.000 | 0.035 | |
| expressionFilter-class | 0.110 | 0.003 | 0.116 | |
| filter-methods | 1.638 | 0.008 | 1.650 | |
| filter-on-methods | 0.108 | 0.000 | 0.108 | |
| filterList-class | 0.006 | 0.000 | 0.006 | |
| filterResult-class | 0.001 | 0.000 | 0.000 | |
| filterResultList-class | 6.481 | 0.179 | 6.694 | |
| filterSummary-class | 0.136 | 0.008 | 0.145 | |
| filterSummaryList-class | 1.963 | 0.019 | 1.994 | |
| flowFrame-class | 5.242 | 0.085 | 5.366 | |
| flowSet-class | 4.057 | 0.091 | 4.180 | |
| fr_append_cols | 1.593 | 0.057 | 1.667 | |
| fsApply | 0.194 | 0.000 | 0.197 | |
| getIndexSort | 0.031 | 0.004 | 0.035 | |
| hyperlog-class | 1.194 | 0.023 | 1.235 | |
| hyperlogtGml2-class | 0.040 | 0.000 | 0.039 | |
| identifier-methods | 0.033 | 0.000 | 0.034 | |
| inverseLogicleTransform | 1.846 | 0.054 | 1.922 | |
| invsplitscale-class | 0.039 | 0.000 | 0.039 | |
| keyword-methods | 1.677 | 0.028 | 1.720 | |
| kmeansFilter-class | 0.155 | 0.007 | 0.164 | |
| linearTransform | 0.043 | 0.000 | 0.044 | |
| lintGml2-class | 0.042 | 0.004 | 0.046 | |
| lnTransform | 2.694 | 0.028 | 2.743 | |
| logTransform | 0.042 | 0.000 | 0.042 | |
| logarithm-class | 0.036 | 0.000 | 0.037 | |
| logicalFilterResult-class | 0.001 | 0.000 | 0.000 | |
| logicleTransform | 1.743 | 0.016 | 1.772 | |
| logicletGml2-class | 0.054 | 0.000 | 0.054 | |
| logtGml2-class | 0.039 | 0.000 | 0.039 | |
| manyFilterResult-class | 0.000 | 0.000 | 0.001 | |
| markernames | 1.666 | 0.035 | 1.716 | |
| multipleFilterResult-class | 0.001 | 0.000 | 0.001 | |
| parameters-methods | 0.033 | 0.004 | 0.037 | |
| polygonGate-class | 0.082 | 0.000 | 0.082 | |
| quadGate-class | 0.201 | 0.008 | 0.211 | |
| quadratic-class | 0.036 | 0.000 | 0.037 | |
| quadraticTransform | 0.045 | 0.000 | 0.046 | |
| ratio-class | 0.054 | 0.000 | 0.054 | |
| ratiotGml2-class | 0.032 | 0.003 | 0.036 | |
| read.FCS | 0.103 | 0.000 | 0.104 | |
| read.FCSheader | 0.006 | 0.000 | 0.007 | |
| read.flowSet | 0.127 | 0.004 | 0.133 | |
| rectangleGate-class | 0.107 | 0.008 | 0.116 | |
| rotate_gate | 0.000 | 0.000 | 0.001 | |
| sampleFilter-class | 0.058 | 0.008 | 0.068 | |
| scaleTransform | 0.045 | 0.000 | 0.046 | |
| scale_gate | 0 | 0 | 0 | |
| shift_gate | 0 | 0 | 0 | |
| singleParameterTransform-class | 0.001 | 0.000 | 0.002 | |
| sinht-class | 0.034 | 0.004 | 0.038 | |
| split-methods | 2.362 | 0.023 | 2.412 | |
| splitScaleTransform | 2.608 | 0.031 | 2.663 | |
| splitscale-class | 0.037 | 0.000 | 0.038 | |
| squareroot-class | 0.036 | 0.000 | 0.037 | |
| timeFilter-class | 3.028 | 0.035 | 3.095 | |
| transform-class | 0.001 | 0.000 | 0.001 | |
| transform | 1.988 | 0.016 | 2.016 | |
| transformFilter-class | 0.613 | 0.004 | 0.621 | |
| transformList-class | 1.532 | 0.008 | 1.550 | |
| transformMap-class | 0.001 | 0.000 | 0.000 | |
| transform_gate | 0 | 0 | 0 | |
| truncateTransform | 0.044 | 0.000 | 0.045 | |
| unitytransform-class | 0.033 | 0.000 | 0.032 | |
| write.FCS | 0.059 | 0.000 | 0.060 | |
| write.flowSet | 1.921 | 0.020 | 1.957 | |