| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:30 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the diffuStats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/diffuStats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 549/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| diffuStats 1.21.0 (landing page) Sergio Picart-Armada
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: diffuStats |
| Version: 1.21.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data diffuStats |
| StartedAt: 2023-06-05 11:03:30 -0000 (Mon, 05 Jun 2023) |
| EndedAt: 2023-06-05 11:04:41 -0000 (Mon, 05 Jun 2023) |
| EllapsedTime: 71.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data diffuStats
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* checking for file ‘diffuStats/DESCRIPTION’ ... OK
* preparing ‘diffuStats’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘intro.Rmd’ using rmarkdown
--- finished re-building ‘intro.Rmd’
--- re-building ‘diffuStats.Rnw’ using Sweave
Attaching package: ‘igraph’
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
Kernel not supplied. Computing regularised Laplacian kernel ...
Done
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
Using supplied kernel matrix...
X1: permuting scores...
Permuting...
X1: computing heatRank...
All done
Using supplied kernel matrix...
X1: permuting scores...
Permuting...
X1: computing heatRank...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
All done
Using supplied kernel matrix...
Using supplied kernel matrix...
X1: permuting scores...
Permuting...
X1: computing heatRank...
All done
Using supplied kernel matrix...
X1: permuting scores...
Permuting...
X1: computing heatRank...
All done
Using supplied kernel matrix...
All done
Warning in wilcox.test.default(x = perf_mat[, met1], y = perf_mat[, met2], :
cannot compute exact p-value with zeroes
Warning in wilcox.test.default(x = perf_mat[, met1], y = perf_mat[, met2], :
cannot compute exact confidence interval with zeroes
Error: processing vignette 'diffuStats.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'diffuStats.tex' failed.
LaTeX errors:
! LaTeX Error: File `dsfont.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.14 \usepackage
{booktabs}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘diffuStats.Rnw’
SUMMARY: processing the following file failed:
‘diffuStats.Rnw’
Error: Vignette re-building failed.
Execution halted