| Back to Build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-06-06 11:00:25 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the affyPLM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/affyPLM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 29/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| affyPLM 1.77.1 (landing page) Ben Bolstad
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
| Package: affyPLM |
| Version: 1.77.1 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL affyPLM |
| StartedAt: 2023-06-05 08:16:07 -0000 (Mon, 05 Jun 2023) |
| EndedAt: 2023-06-05 08:16:47 -0000 (Mon, 05 Jun 2023) |
| EllapsedTime: 39.2 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL affyPLM ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘affyPLM’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 10.3.1’ gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c LESN.c -o LESN.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c PLM_avg_log.c -o PLM_avg_log.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c PLM_biweight.c -o PLM_biweight.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c PLM_log_avg.c -o PLM_log_avg.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c PLM_medianPM.c -o PLM_medianPM.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c PLM_median_logPM.c -o PLM_median_logPM.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c PLM_medianpolish.c -o PLM_medianpolish.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c PLM_modelmatrix.c -o PLM_modelmatrix.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c SCAB.c -o SCAB.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c chipbackground.c -o chipbackground.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c common_types.c -o common_types.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c do_PLMrlm.c -o do_PLMrlm.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c do_PLMrma.c -o do_PLMrma.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c do_PLMthreestep.c -o do_PLMthreestep.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c idealmismatch.c -o idealmismatch.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c lm_threestep.c -o lm_threestep.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c matrix_functions.c -o matrix_functions.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c nthLargestPM.c -o nthLargestPM.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c preprocess.c -o preprocess.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c psi_fns.c -o psi_fns.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c qnorm_probeset.c -o qnorm_probeset.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c read_rmaexpress.c -o read_rmaexpress.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c rlm_PLM.c -o rlm_PLM.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c rlm_threestep.c -o rlm_threestep.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c rma_PLM.c -o rma_PLM.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c rma_common.c -o rma_common.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c scaling.c -o scaling.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c threestep.c -o threestep.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c threestep_PLM.c -o threestep_PLM.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c threestep_common.c -o threestep_common.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c threestep_summary.c -o threestep_summary.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c threestep_summary_methods.c -o threestep_summary_methods.o gcc -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.0/site-library/preprocessCore/include' -I/usr/local/include -fPIC -g -O2 -c transfns.c -o transfns.o gcc -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o affyPLM.so LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o SCAB.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o -llapack -lblas -lgfortran -lm -lz -L/home/biocbuild/R/R-4.3.0/lib -lR installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-affyPLM/00new/affyPLM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affyPLM)