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This page was generated on 2023-06-06 11:00:45 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
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CHECK results for Xeva on kunpeng2


To the developers/maintainers of the Xeva package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Xeva.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 2186/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Xeva 1.17.0  (landing page)
Benjamin Haibe-Kains
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/Xeva
git_branch: devel
git_last_commit: d4db827
git_last_commit_date: 2023-04-25 15:08:16 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: Xeva
Version: 1.17.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings Xeva_1.17.0.tar.gz
StartedAt: 2023-06-06 09:32:04 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 09:38:00 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 355.5 seconds
RetCode: 0
Status:   OK  
CheckDir: Xeva.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings Xeva_1.17.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/Xeva.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘Xeva/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Xeva’ version ‘1.17.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Xeva’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 31 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘Xeva.Rnw’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/Xeva.Rcheck/00check.log’
for details.



Installation output

Xeva.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL Xeva
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘Xeva’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Xeva)

Tests output


Example timings

Xeva.Rcheck/Xeva-Ex.timings

nameusersystemelapsed
ABC0.0060.0000.006
AUC0.0250.0000.025
TGI0.0010.0000.001
addExperimentalDesign0.1410.0120.154
angle0.0090.0000.010
batchInfo0.130.000.13
createXevaSet0.1060.0040.195
dosePlot0.3720.0080.381
downloadXevaSet0.0190.0001.672
drugInform0.1110.0000.111
drugSensitivitySig1.4130.0951.511
getExperiment0.1610.0050.166
getMolecularProfiles0.1070.0040.112
lmm0.0890.0110.102
mRECIST0.0020.0000.002
modelInfo0.1130.0000.113
plotPDX1.6910.1471.844
plotmRECIST2.5800.0682.656
response0.1760.0040.180
selectModelIds0.2040.0080.213
sensitivity0.1190.0000.119
setResponse3.0780.1313.219
slope0.0080.0030.011
subsetXeva0.2420.0000.243
summarizeMolecularProfiles0.1490.0040.153
summarizeResponse0.2410.0000.242
waterfall1.1110.0161.129