Back to Build/check report for BioC 3.18:   simplified   long
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2023-06-06 11:00:44 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for TTMap on kunpeng2


To the developers/maintainers of the TTMap package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TTMap.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 2124/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TTMap 1.23.0  (landing page)
Rachel Jeitziner
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/TTMap
git_branch: devel
git_last_commit: 0790e67
git_last_commit_date: 2023-04-25 14:59:17 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: TTMap
Version: 1.23.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:TTMap.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings TTMap_1.23.0.tar.gz
StartedAt: 2023-06-06 09:00:49 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 09:06:17 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 328.5 seconds
RetCode: 0
Status:   OK  
CheckDir: TTMap.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:TTMap.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings TTMap_1.23.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/TTMap.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘TTMap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TTMap’ version ‘1.23.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TTMap’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                      user system elapsed
ttmap_sgn_genes                     16.688  0.499  16.791
ttmap                               16.416  0.193  16.239
calcul_e                            15.252  0.247  15.557
hyperrectangle_deviation_assessment 13.016  0.128  13.164
control_adjustment                  11.528  0.088  11.635
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘TTMap.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

TTMap.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL TTMap
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘TTMap’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TTMap)

Tests output


Example timings

TTMap.Rcheck/TTMap-Ex.timings

nameusersystemelapsed
TTMap-package000
calcul_e15.252 0.24715.557
control_adjustment11.528 0.08811.635
generate_correlation0.0010.0000.002
hyperrectangle_deviation_assessment13.016 0.12813.164
make_matrices3.4690.0203.495
ttmap16.416 0.19316.239
ttmap_sgn_genes16.688 0.49916.791
write_pcl4.0810.2404.325