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This page was generated on 2023-06-06 11:00:42 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for SpidermiR on kunpeng2


To the developers/maintainers of the SpidermiR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpidermiR.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1960/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpidermiR 1.31.0  (landing page)
Claudia Cava
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/SpidermiR
git_branch: devel
git_last_commit: 4d647ad
git_last_commit_date: 2023-04-25 14:45:19 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: SpidermiR
Version: 1.31.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:SpidermiR.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings SpidermiR_1.31.0.tar.gz
StartedAt: 2023-06-06 07:38:11 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 07:41:11 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 180.3 seconds
RetCode: 0
Status:   OK  
CheckDir: SpidermiR.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:SpidermiR.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings SpidermiR_1.31.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/SpidermiR.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘SpidermiR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SpidermiR’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpidermiR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘gdata’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                   user system elapsed
SpidermiRdownload_miRNAprediction 8.939  0.949  21.599
SpidermiRprepare_NET              1.399  0.064  11.418
SpidermiRdownload_drug_gene       1.136  0.071  10.234
SpidermiRquery_disease            0.662  0.018   6.993
SpidermiRdownload_net             0.221  0.017   6.439
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/SpidermiR.Rcheck/00check.log’
for details.



Installation output

SpidermiR.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL SpidermiR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘SpidermiR’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpidermiR)

Tests output


Example timings

SpidermiR.Rcheck/SpidermiR-Ex.timings

nameusersystemelapsed
SpidermiRanalyze_degree_centrality0.0040.0000.004
SpidermiRanalyze_direct_net0.0040.0000.004
SpidermiRanalyze_direct_subnetwork0.0030.0040.007
SpidermiRanalyze_subnetwork_neigh0.0040.0000.005
SpidermiRdownload_drug_gene 1.136 0.07110.234
SpidermiRdownload_miRNAprediction 8.939 0.94921.599
SpidermiRdownload_net0.2210.0176.439
SpidermiRprepare_NET 1.399 0.06411.418
SpidermiRquery_disease0.6620.0186.993
SpidermiRquery_networks_type0.0170.0002.673
SpidermiRquery_spec_networks0.0430.0000.709
SpidermiRquery_species0.0110.0000.390