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This page was generated on 2023-06-06 11:00:41 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for SELEX on kunpeng2


To the developers/maintainers of the SELEX package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SELEX.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1849/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SELEX 1.33.0  (landing page)
Harmen J. Bussemaker
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/SELEX
git_branch: devel
git_last_commit: 3abfa5d
git_last_commit_date: 2023-04-25 14:37:47 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

Summary

Package: SELEX
Version: 1.33.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings SELEX_1.33.0.tar.gz
StartedAt: 2023-06-06 06:39:27 -0000 (Tue, 06 Jun 2023)
EndedAt: 2023-06-06 06:41:43 -0000 (Tue, 06 Jun 2023)
EllapsedTime: 136.2 seconds
RetCode: 0
Status:   OK  
CheckDir: SELEX.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings SELEX_1.33.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/SELEX.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘SELEX/DESCRIPTION’ ... OK
* this is package ‘SELEX’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SELEX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
SELEX           17.042  1.394   6.968
selex.seqfilter  7.833  0.476   2.480
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘SELEX.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

SELEX.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL SELEX
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘SELEX’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SELEX)

Tests output


Example timings

SELEX.Rcheck/SELEX-Ex.timings

nameusersystemelapsed
SELEX17.042 1.394 6.968
selex.affinities0.9880.0240.413
selex.config0.1090.0000.035
selex.countSummary0.9370.0250.364
selex.counts1.4040.0440.582
selex.defineSample0.1210.0090.039
selex.exampledata0.0840.0030.029
selex.fastqPSFM0.9530.0130.364
selex.getAttributes0.2660.0080.061
selex.getRound00.2640.0040.105
selex.getSeqfilter0.0990.0000.030
selex.infogain1.4430.0250.491
selex.infogainSummary0.8230.0070.253
selex.jvmStatus0.0850.0040.036
selex.kmax1.1060.1340.610
selex.kmerPSFM0.2870.0440.194
selex.loadAnnotation0.1790.0050.097
selex.mm0.4460.0080.238
selex.mmProb0.3270.0110.219
selex.mmSummary0.3410.0270.275
selex.revcomp0.7510.0400.460
selex.run0.9770.0130.519
selex.sample0.1600.0120.086
selex.samplePSFM0.6410.0200.327
selex.sampleSummary0.1360.0050.072
selex.saveAnnotation0.0380.0040.041
selex.seqfilter7.8330.4762.480
selex.setwd0.0880.0000.018
selex.split0.4140.0290.165
selex.summary0.8010.0200.563