| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:39 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the RadioGx package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RadioGx.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1594/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RadioGx 2.5.0 (landing page) Benjamin Haibe-Kains
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
| Package: RadioGx |
| Version: 2.5.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings RadioGx_2.5.0.tar.gz |
| StartedAt: 2023-06-06 04:49:09 -0000 (Tue, 06 Jun 2023) |
| EndedAt: 2023-06-06 04:54:42 -0000 (Tue, 06 Jun 2023) |
| EllapsedTime: 333.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RadioGx.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:RadioGx.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings RadioGx_2.5.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/RadioGx.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘RadioGx/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RadioGx’ version ‘2.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RadioGx’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 52 marked UTF-8 strings
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘RadioGx.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.18-bioc/meat/RadioGx.Rcheck/00check.log’
for details.
RadioGx.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL RadioGx ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘RadioGx’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RadioGx)
RadioGx.Rcheck/RadioGx-Ex.timings
| name | user | system | elapsed | |
| RadioSet-accessors | 1.761 | 0.144 | 1.909 | |
| availableRSets | 0 | 0 | 0 | |
| checkRSetStructure | 0.498 | 0.012 | 0.511 | |
| computeAUC | 0.003 | 0.000 | 0.003 | |
| computeD10 | 0 | 0 | 0 | |
| computeSF2 | 0.001 | 0.000 | 0.000 | |
| dim-RadioSet-method | 1.176 | 0.000 | 1.178 | |
| doseResponseCurve | 0.066 | 0.000 | 0.066 | |
| downloadRSet | 0 | 0 | 0 | |
| linearQuadraticModel | 0.005 | 0.000 | 0.005 | |
| plotCurve | 0.026 | 0.000 | 0.026 | |
| radSensitivitySig | 0.750 | 0.022 | 0.772 | |
| show-RadioSet-method | 0.382 | 0.004 | 0.386 | |
| show-RadioSig-method | 0.631 | 0.007 | 0.637 | |
| showSigAnnot-RadioSig-method | 0.637 | 0.006 | 0.643 | |
| sub-RadioSet-ANY-ANY-ANY-method | 0.638 | 0.001 | 0.642 | |
| subsetTo-RadioSet-method | 0.13 | 0.00 | 0.13 | |
| summarizeMolecularProfiles-RadioSet-method | 0.554 | 0.004 | 0.558 | |
| summarizeSensitivityProfiles-RadioSet-method | 0.411 | 0.004 | 0.416 | |