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This page was generated on 2023-06-06 11:00:40 -0000 (Tue, 06 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4366
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INSTALL results for RNAdecay on kunpeng2


To the developers/maintainers of the RNAdecay package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAdecay.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1712/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAdecay 1.21.0  (landing page)
Reed Sorenson
Snapshot Date: 2023-06-05 06:35:06 -0000 (Mon, 05 Jun 2023)
git_url: https://git.bioconductor.org/packages/RNAdecay
git_branch: devel
git_last_commit: 311abc6
git_last_commit_date: 2023-04-25 15:01:35 -0000 (Tue, 25 Apr 2023)
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

Summary

Package: RNAdecay
Version: 1.21.0
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL RNAdecay
StartedAt: 2023-06-05 08:41:07 -0000 (Mon, 05 Jun 2023)
EndedAt: 2023-06-05 08:49:14 -0000 (Mon, 05 Jun 2023)
EllapsedTime: 487.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL RNAdecay
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’
* installing *source* package ‘RNAdecay’ ...
** using staged installation
** libs
/home/biocbuild/R/R-4.3.0/bin/Rscript --vanilla -e "TMB::compile('general_dExp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/biocbuild/.R/Makevars 
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I"/home/biocbuild/R/R-4.3.0/library/TMB/include" -I"/home/biocbuild/R/R-4.3.0/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_1sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fPIC  -g -O2  -c general_dExp_1sse.cpp -o general_dExp_1sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o general_dExp_1sse.so general_dExp_1sse.o -L/home/biocbuild/R/R-4.3.0/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.5.4
Current Matrix version is 1.5.4.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/R/R-4.3.0/bin/Rscript --vanilla -e "TMB::compile('general_Exp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/biocbuild/.R/Makevars 
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I"/home/biocbuild/R/R-4.3.0/library/TMB/include" -I"/home/biocbuild/R/R-4.3.0/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_1sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fPIC  -g -O2  -c general_Exp_1sse.cpp -o general_Exp_1sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o general_Exp_1sse.so general_Exp_1sse.o -L/home/biocbuild/R/R-4.3.0/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.5.4
Current Matrix version is 1.5.4.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/R/R-4.3.0/bin/Rscript --vanilla -e "TMB::compile('general_dExp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/biocbuild/.R/Makevars 
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I"/home/biocbuild/R/R-4.3.0/library/TMB/include" -I"/home/biocbuild/R/R-4.3.0/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_2sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fPIC  -g -O2  -c general_dExp_2sse.cpp -o general_dExp_2sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o general_dExp_2sse.so general_dExp_2sse.o -L/home/biocbuild/R/R-4.3.0/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.5.4
Current Matrix version is 1.5.4.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/R/R-4.3.0/bin/Rscript --vanilla -e "TMB::compile('general_Exp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/biocbuild/.R/Makevars 
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I"/home/biocbuild/R/R-4.3.0/library/TMB/include" -I"/home/biocbuild/R/R-4.3.0/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_2sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fPIC  -g -O2  -c general_Exp_2sse.cpp -o general_Exp_2sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o general_Exp_2sse.so general_Exp_2sse.o -L/home/biocbuild/R/R-4.3.0/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.5.4
Current Matrix version is 1.5.4.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/R/R-4.3.0/bin/Rscript --vanilla -e "TMB::compile('general_dExp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/biocbuild/.R/Makevars 
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I"/home/biocbuild/R/R-4.3.0/library/TMB/include" -I"/home/biocbuild/R/R-4.3.0/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_3sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fPIC  -g -O2  -c general_dExp_3sse.cpp -o general_dExp_3sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o general_dExp_3sse.so general_dExp_3sse.o -L/home/biocbuild/R/R-4.3.0/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.5.4
Current Matrix version is 1.5.4.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/R/R-4.3.0/bin/Rscript --vanilla -e "TMB::compile('general_Exp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/biocbuild/.R/Makevars 
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I"/home/biocbuild/R/R-4.3.0/library/TMB/include" -I"/home/biocbuild/R/R-4.3.0/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_3sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fPIC  -g -O2  -c general_Exp_3sse.cpp -o general_Exp_3sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o general_Exp_3sse.so general_Exp_3sse.o -L/home/biocbuild/R/R-4.3.0/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.5.4
Current Matrix version is 1.5.4.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/R/R-4.3.0/bin/Rscript --vanilla -e "TMB::compile('general_dExp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/biocbuild/.R/Makevars 
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I"/home/biocbuild/R/R-4.3.0/library/TMB/include" -I"/home/biocbuild/R/R-4.3.0/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_dExp_4sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fPIC  -g -O2  -c general_dExp_4sse.cpp -o general_dExp_4sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o general_dExp_4sse.so general_dExp_4sse.o -L/home/biocbuild/R/R-4.3.0/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.5.4
Current Matrix version is 1.5.4.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
/home/biocbuild/R/R-4.3.0/bin/Rscript --vanilla -e "TMB::compile('general_Exp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
Note: Using Makevars in /home/biocbuild/.R/Makevars 
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.0/include" -DNDEBUG -I"/home/biocbuild/R/R-4.3.0/library/TMB/include" -I"/home/biocbuild/R/R-4.3.0/library/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_general_Exp_4sse  -DCPPAD_FRAMEWORK  -I/usr/local/include    -fPIC  -g -O2  -c general_Exp_4sse.cpp -o general_Exp_4sse.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.0/lib -L/usr/local/lib -o general_Exp_4sse.so general_Exp_4sse.o -L/home/biocbuild/R/R-4.3.0/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.18-bioc/meat/RNAdecay/src'
[1] 0
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.5.4
Current Matrix version is 1.5.4.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
installing to /home/biocbuild/R/R-4.3.0/site-library/00LOCK-RNAdecay/00new/RNAdecay/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RNAdecay)