| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-06-06 11:00:40 -0000 (Tue, 06 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.0 (2023-04-21) -- "Already Tomorrow" | 4366 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the RImmPort package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RImmPort.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1696/2199 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RImmPort 1.29.0 (landing page) Zicheng Hu
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | |||||||||
| Package: RImmPort |
| Version: 1.29.0 |
| Command: /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings RImmPort_1.29.0.tar.gz |
| StartedAt: 2023-06-06 05:22:25 -0000 (Tue, 06 Jun 2023) |
| EndedAt: 2023-06-06 05:23:29 -0000 (Tue, 06 Jun 2023) |
| EllapsedTime: 64.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RImmPort.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R-4.3.0/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/home/biocbuild/R/R-4.3.0/site-library --timings RImmPort_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/RImmPort.Rcheck’
* using R version 4.3.0 (2023-04-21)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* checking for file ‘RImmPort/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RImmPort’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RImmPort’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildNewSqliteDb: no visible global function definition for
‘dbListTables’
Undefined global functions or variables:
dbListTables
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘RImmPort_Article.Rmd’ using ‘UTF-8’... OK
‘RImmPort_QuickStart.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.18-bioc/meat/RImmPort.Rcheck/00check.log’
for details.
RImmPort.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.0/bin/R CMD INSTALL RImmPort ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.0/site-library’ * installing *source* package ‘RImmPort’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RImmPort)
RImmPort.Rcheck/RImmPort-Ex.timings
| name | user | system | elapsed | |
| Events-class | 0.453 | 0.017 | 0.530 | |
| Findings-class | 0.296 | 0.008 | 0.305 | |
| Interventions-class | 0.258 | 0.000 | 0.258 | |
| SpecialPurpose-class | 0.245 | 0.008 | 0.254 | |
| Study-class | 0.321 | 0.008 | 0.329 | |
| TrialDesign-class | 0.246 | 0.008 | 0.254 | |
| buildNewSqliteDb | 0.001 | 0.000 | 0.001 | |
| getAssayDataOfStudies | 0.095 | 0.008 | 0.103 | |
| getDomainCode | 0.001 | 0.000 | 0.000 | |
| getDomainDataOfStudies | 0.046 | 0.000 | 0.046 | |
| getListOfAssayTypes | 0.001 | 0.000 | 0.000 | |
| getListOfDomains | 0 | 0 | 0 | |
| getListOfStudies | 0.045 | 0.000 | 0.045 | |
| getStudiesWithSpecificAssayData | 0.053 | 0.004 | 0.057 | |
| getStudiesWithSpecificDomainData | 0.043 | 0.004 | 0.048 | |
| getStudy | 0.244 | 0.008 | 0.252 | |
| loadSerializedStudyData | 0.004 | 0.000 | 0.006 | |
| mergeDomainAndSupplemental | 0.179 | 0.008 | 0.188 | |
| serialzeStudyData | 0.465 | 0.004 | 0.473 | |
| setImmPortDataSource | 0.045 | 0.000 | 0.044 | |